CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MOOTA (Tyrosyl-tRNA synthetase OS=Moorella thermoacetica (strain ATCC 39073) GN=tyrS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 53/172 (30.81%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  258 RRGLLESITSDNL-----RSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RRG+ E +  ++L     +SLA+   K LKV  G DPTA  +HLG+ + +  L  F   GHQ + +IG  T R+GDP+GKS  R +L    +  N     +    +       +  N  W    +F + ++   R   +  M+ ++   +R +  + +S  EF Y L+QGYD
Sbjct:   23 RRGVAEIVPEEDLQAKLRKSLATG--KPLKVKLGLDPTAPDIHLGHTVVLQKLRQFQELGHQVIIIIGDFTGRIGDPTGKSETRRQLTEAEILANAETYKEQIFKVLDPEQTRVTFNSHWLGKLTFAEVIELAAR-TTVARMLERDDFARRFQENRPISIHEFFYPLMQGYD 191          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_FRATT (Tyrosyl-tRNA synthetase OS=Francisella tularensis subsp. tularensis GN=tyrS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 53/167 (31.74%), Postives = 82/167 (49.10%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG  E +  + L      + K L +  G DPTA  +HLG+ + I  L      GH+   LIG  TA++GDP+GK+  RP L  + +  N    +K    I      +I  N DW+   S  + +K   + + +  M+ ++   KR +  Q +S  EF Y L+QGYD
Sbjct:   12 KRGADEVLIEEELIKKLQKH-KPLIIKFGCDPTAPDIHLGHTVVINKLKQLQDLGHKIHFLIGDFTAQIGDPTGKNATRPPLTAEEVAANAETYTKQVFKILDKDKTIIRRNGDWFNKMSASEMIKLASK-STVARMLERDDFSKRYKGGQSISIHEFLYPLVQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_XYLFA (Tyrosyl-tRNA synthetase OS=Xylella fastidiosa GN=tyrS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.966e-17
Identity = 52/169 (30.77%), Postives = 82/169 (48.52%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L  RG  E +  D L     S  + L++  GFDPTA  LHLG+ + +  +  F   GHQ + LIG  T  +GDP+GK++ R  L  + +  N          +   +   +  N +W+   S +D +K   +   +  M+ ++   KR  S+Q +   EF Y L+QGYD
Sbjct:   10 LIERGANEILKFDELERRLRSG-RPLRIKAGFDPTAPDLHLGHTVLLNKMRQFQELGHQVIFLIGDFTGMIGDPTGKNVTRKPLSHEDVLANARTYEDQVFKVLDRTLTEVRFNSEWFGKMSAVDMIKLAAQHT-VARMLERDDFAKRFVSQQPIVIHEFLYPLIQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PROM9 (Tyrosyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9312) GN=tyrS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.966e-17
Identity = 57/165 (34.55%), Postives = 81/165 (49.09%), Query Frame = 3
Query:  306 ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFG--------------SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            A  N K L+V  G DPT   +HLG+ +    L  F   GH AV +IG  TA++GDP+GK+  R +L     EK +   +KT+ T  G                 + I  N +W K  +    ++ +G  A +  M+AKE   KR  S+  ++  EF Y LLQGYD
Sbjct:   35 AKKNNKKLRVKLGIDPTGTDIHLGHSILFKKLRAFQDNGHIAVLIIGDFTAQIGDPTGKNKTRVQLS----EKQVKDNAKTYLTQLGMGKPANESILDFDSKDKIEIRYNSEWLKGLNLNSIIELMGS-ATVSQMLAKEEFNKRYNSQVPIALHEFLYPLLQGYD 194          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_METCA (Tyrosyl-tRNA synthetase OS=Methylococcus capsulatus GN=tyrS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.966e-17
Identity = 50/166 (30.12%), Postives = 81/166 (48.80%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RG  E +  + L+    S  K L++  GFDPTA  LHLG+ + +  L  F   GH+ + LIG  T  +GDP+GK++ R  L  D + +N     +    +      +++ N  W    +  D ++   +   +  M+ ++   KR    Q +S  EF Y L+QGYD
Sbjct:   10 RGTHEVLRLEELQKRIESG-KPLRIKAGFDPTAPDLHLGHTVLLNKLKQFQDLGHETIFLIGDFTGMIGDPTGKNVTRRPLTRDEVIENAKTYEEQIYKVLCPERTLVMFNSSWMNAMTSADLIQLAAKHT-VARMLERDDFAKRYAGGQPISIHEFLYPLIQGYD 173          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_HAEIN (Tyrosyl-tRNA synthetase OS=Haemophilus influenzae GN=tyrS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.966e-17
Identity = 53/167 (31.74%), Postives = 81/167 (48.50%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG  E ++  +L      N + LKV  G DPTA  +HLG+ + +  L  F + GH+   LIG  T  VGDPSGK+  RP L  + + +N     +    I       I+ N +W         ++    +  +  M+ ++  KKR  + Q ++  EF Y LLQGYD
Sbjct:   12 KRGTDEILSEADLIEKLKEN-RPLKVKLGADPTAPDIHLGHTVVLNKLRQFQQLGHEVYFLIGDFTGMVGDPSGKNATRPPLSREDVLRNAETYKEQIYKILDPQKTKIVFNSEWLSKLGTXGMIRLASNYT-VARMLERDDFKKRFGNNQPIAIHEFIYPLLQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_MANSM (Tyrosyl-tRNA synthetase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=tyrS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.098e-17
Identity = 55/174 (31.61%), Postives = 85/174 (48.85%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            NVV    +RG+ E ++  +L      N + LK+  G DPTA  +HLG+ + +  L  F   GH+ + LIG  T  VGDPSGK+  RP L  + + +N     +    I       I+ N DW         ++    +  +  M+ ++  KKR   +Q ++  EF Y LLQG+D
Sbjct:    5 NVVLAELKRGVDEVLSEADLIEKLKEN-RPLKIKLGADPTAPDIHLGHTVVLNKLRQFQNFGHEVIFLIGDFTGMVGDPSGKNKTRPPLSREDVLRNAETYKQQIYKILDPQKTRIVFNSDWLGKLGTEGMIRLASNYT-VARMLERDDFKKRFTEKQPIAIHEFIYPLLQGHD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_HAEI8 (Tyrosyl-tRNA synthetase OS=Haemophilus influenzae (strain 86-028NP) GN=tyrS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 53/167 (31.74%), Postives = 81/167 (48.50%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG  E ++  +L      N + LKV  G DPTA  +HLG+ + +  L  F + GH+   LIG  T  VGDPSGK+  RP L  + + +N     +    I       I+ N +W         ++    +  +  M+ ++  KKR  + Q ++  EF Y LLQGYD
Sbjct:   12 KRGTDEILSEADLIEKLKEN-RPLKVKLGADPTAPDIHLGHTVVLNKLRQFQQLGHEVYFLIGDFTGMVGDPSGKNATRPPLSREDVLRNAETYKEQIYKILDPQKTKIVFNSEWLSKLGTEGMIRLASNYT-VARMLERDDFKKRFGNNQPIAIHEFIYPLLQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_HAEDU (Tyrosyl-tRNA synthetase OS=Haemophilus ducreyi GN=tyrS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 50/167 (29.94%), Postives = 84/167 (50.30%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG+    + ++L +    N + L++  G DPTA  +HLG+ + I  L  F + GH+ + LIG  T  VGDPSGK+  RP L  + + +N     +    I   +   ++ N  W  +      ++    +  +  M+ ++  KKR  + Q ++  EF Y LLQGYD
Sbjct:   13 KRGVENIYSEEDLIAKLKEN-RPLRIKLGADPTAPDIHLGHTVVINKLRQFQQLGHEVIFLIGDFTGMVGDPSGKNTTRPPLTREDVLRNAETYKQQLFKILDPNKTRVVFNSAWLNELGTEGMIRLTSNYT-VARMLERDDFKKRFTNNQPIAIHEFIYPLLQGYD 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_WOLSU (Tyrosyl-tRNA synthetase OS=Wolinella succinogenes GN=tyrS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.552e-16
Identity = 55/169 (32.54%), Postives = 84/169 (49.70%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASSNEK---TLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RG+ E I  + ++SL     K   T  +  GFDPTA  LHLG+ + I  ++ F + G     LIG  TA +GDP+GKS  R  L  + + +N          I      VI  N +W +       ++   +F+ +  M+ ++  +KR +S+  +S  EF Y LLQGYD
Sbjct:   18 RGVNEIIGIEYIQSLVERYYKSGETFSIKAGFDPTAPDLHLGHTVLIQKMATFQKHGAIVTFLIGDYTAMIGDPTGKSETRKPLTREQVLQNAQSYQDQVFKILDPQKTVIRFNSEWLEKLGTAGMIELTAKFS-VARMLERDDFEKRYKSQTPISLVEFIYPLLQGYD 185          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_MOOTA5.334e-1730.81Tyrosyl-tRNA synthetase OS=Moorella thermoacetica ... [more]
SYY_FRATT5.334e-1731.74Tyrosyl-tRNA synthetase OS=Francisella tularensis ... [more]
SYY_XYLFA6.966e-1730.77Tyrosyl-tRNA synthetase OS=Xylella fastidiosa GN=t... [more]
SYY_PROM96.966e-1734.55Tyrosyl-tRNA synthetase OS=Prochlorococcus marinus... [more]
SYY_METCA6.966e-1730.12Tyrosyl-tRNA synthetase OS=Methylococcus capsulatu... [more]
SYY_HAEIN6.966e-1731.74Tyrosyl-tRNA synthetase OS=Haemophilus influenzae ... [more]
SYY_MANSM9.098e-1731.61Tyrosyl-tRNA synthetase OS=Mannheimia succinicipro... [more]
SYY_HAEI81.188e-1631.74Tyrosyl-tRNA synthetase OS=Haemophilus influenzae ... [more]
SYY_HAEDU1.188e-1629.94Tyrosyl-tRNA synthetase OS=Haemophilus ducreyi GN=... [more]
SYY_WOLSU1.552e-1632.54Tyrosyl-tRNA synthetase OS=Wolinella succinogenes ... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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