CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PROMP (Tyrosyl-tRNA synthetase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=tyrS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.552e-16
Identity = 63/187 (33.69%), Postives = 94/187 (50.27%), Query Frame = 3
Query:  261 RGLLESITSDNLRSLASS-------NEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFG---SSNVVILN-----------NYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RG+ ES    N     SS       ++  L+V  G DPT   +HLG+ +    L  F   GH AV +IG  TA++GDP+GK+  R +L  + +++N    SKT+    G   SS+  IL+           N +W K+ +    ++ +G  A +  M+AKE   KR  S+  ++  EF Y LLQGYD
Sbjct:   13 RGIEESFPLRNFDQTLSSKINDANKSKSKLRVKLGIDPTGTDIHLGHSILFKKLRAFQDNGHVAVLIIGDFTAQIGDPTGKNKTRVQLSEEEVKEN----SKTYLNQLGMGKSSDKSILDFDSEDRIEIRYNSEWLKNLNLNSIIELMGS-ATVSQMLAKEEFNKRYNSQTPIALHEFLYPLLQGYD 194          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_NITEU (Tyrosyl-tRNA synthetase OS=Nitrosomonas europaea GN=tyrS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.552e-16
Identity = 52/169 (30.77%), Postives = 79/169 (46.75%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L RRG  E +  +      +   + L+V  GFDPTA  LHLG+ + +  L      GH  + LIG  T  +GDPSGKS  RP L  + + +N    +     I       ++ N  W   FS  D ++    +  +  M+ ++   KR    + ++  EF Y L+QGYD
Sbjct:   11 LIRRGCQELLIEEEFAQKLAQG-RPLRVKAGFDPTAPDLHLGHTVLLNKLRQLQDLGHHILFLIGDFTGMIGDPSGKSATRPPLTREQITQNADTYASQVFKILKPEQTEVVFNSSWMDKFSAADVIRLAATYT-VARMLERDDFSKRYHENRPIAIHEFLYPLVQGYD 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_GLOVI (Tyrosyl-tRNA synthetase OS=Gloeobacter violaceus GN=tyrS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.552e-16
Identity = 51/151 (33.77%), Postives = 73/151 (48.34%), Query Frame = 3
Query:  306 ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            A +    L+V  G DPT   LHLG+ + +  L  F   GH A+ LIGG TA++GDP+GKS  RP L    +E+           I     + + NN +W         +K +     +  M+AKE   +R E+   +   EF Y L+QGYD
Sbjct:   32 AETARMPLRVKLGIDPTRPDLHLGHTVVLRKLREFQDLGHTAILLIGGFTAQIGDPTGKSEARPRLSAAEVEEYAETYLDQARLILNFDTLEVRNNTEWLSGLDLAAIIKLLAS-TSVAQMLAKEDFGQRYEAGTAIYLHEFLYPLMQGYD 181          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PROMA (Tyrosyl-tRNA synthetase OS=Prochlorococcus marinus GN=tyrS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.027e-16
Identity = 55/163 (33.74%), Postives = 81/163 (49.69%), Query Frame = 3
Query:  300 SLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNI--------LGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            S AS +   L+V  G DPT   +HLG+ +    L  F   GH A+ +IG  TAR+GDP+GKS  R +L  + +EKN          G SK  S +       + +  N +W + F  +  +  + + + +G M+AKE    R  S   ++  EF Y L QGYD
Sbjct:   38 SQASRSNVPLRVKLGIDPTGSEIHLGHSIIFRKLRAFQDAGHTAILIIGDFTARIGDPTGKSKTRVQLSPEEVEKNSENYLNQLGKGQSKETSLLDFETEGRLEVRRNSEWLEGFDMVQIIDLLSK-STVGQMLAKEEFANRYTSGTSIALHEFLYPLFQGYD 199          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_COLP3 (Tyrosyl-tRNA synthetase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tyrS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.647e-16
Identity = 51/167 (30.54%), Postives = 81/167 (48.50%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG  E +  + L +   +  K LK+  GFDPTA  LHLG+ + I  L  F + GH+ + LIG  T  +GDP+GK++ R  L  + +  N     +    I   +   +  N  W         L+   R   +  M+ ++  KKR  + Q ++  EF Y L+QG+D
Sbjct:   12 KRGAEEILVEEELLTKLKTG-KPLKIKAGFDPTAPDLHLGHTVLINKLRQFQQLGHEVIFLIGDFTGMIGDPTGKNVTRKALTKEDVLANAETYKEQVFKILDPAKTTVAFNSTWMDKLGAAGMLQLASR-QTVARMMERDDFKKRYANGQAIAIHEFMYPLVQGWD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SYNY3 (Tyrosyl-tRNA synthetase OS=Synechocystis sp. (strain PCC 6803) GN=tyrS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.515e-16
Identity = 50/155 (32.26%), Postives = 77/155 (49.68%), Query Frame = 3
Query:  303 LASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKN---ILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            + +  ++ L+V  G DPT   +HLG+ +    L  F   GH AV +IG  TA++GDP+GKS  R +L  D +++N    L   K          + I  N +W  +      L+ +     +G M+AKE   +R + E  +   EF Y L+QGYD
Sbjct:   33 ILTQQDRPLRVKLGIDPTGTDIHLGHSIPFRKLRAFQDAGHTAVVIIGDFTAQIGDPTGKSEVRKQLTADQVKRNAESYLAQLKPILDFDTPGRLEIRYNSEWLSNLDLNKILELLATMT-VGQMLAKEGFAERFQKENPIFLHEFLYPLMQGYD 186          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BDEBA (Tyrosyl-tRNA synthetase OS=Bdellovibrio bacteriovorus GN=tyrS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.515e-16
Identity = 53/159 (33.33%), Postives = 76/159 (47.80%), Query Frame = 3
Query:  288 DNLRSLASSNE--KTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            D L+ L  S E  K L +  G DPT   +HLG+ + I  L  F   GH+   LIG  TA +GDPSGK+  RP L  + +E+N    +K    I       I+ N  W    +  +F+    ++  +  ++ +E   KR  S   +   EF Y L QGYD
Sbjct:   23 DMLKKLKRSIETKKPLNIKLGADPTRPDIHLGHTVVINKLKTFQDLGHKVSFLIGDFTAMIGDPSGKNSTRPMLTREEIEENGRSYAKQIFKILDPEKTEIVYNSSWIMKMTPAEFITMTSKYT-VAQLLEREDFTKRYRSGTPIGIHEFIYPLTQGYD 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY2_BACLD (Tyrosyl-tRNA synthetase 2 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.515e-16
Identity = 55/194 (28.35%), Postives = 93/194 (47.94%), Query Frame = 3
Query:  186 VHQLQSDPQTQTHGRHPNVVDILERRGLLESITSDNLRSLASSNEKT---LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            + Q Q D  T    R       L   G  E I  + LR+  + +  T   LK+  G DP+A  +HLG+ + +  L  F   GH    LIG  T ++GDP+GKS  R +L  + + +N     + F  +   + V +  N  W K  +  D ++  G+   +  ++ ++  ++R+  ++ +S  EF Y L+QGYD
Sbjct:    1 MQQQQFDQLTTAEKREVERQLHLYMDGAEEVIPPEELRAKLAKSILTGEPLKIKLGLDPSAPDVHLGHTVVLNKLRQFQENGHIVQLLIGDFTGKIGDPTGKSAARKQLTDEEVRRNAETYFQQFGKVLDQNKVELHYNSKWLKRLTLEDVIELAGKIT-VARLMERDDFEERIAMQKPISLHEFFYPLMQGYD 193          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_GEOSL (Tyrosyl-tRNA synthetase OS=Geobacter sulfurreducens GN=tyrS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.897e-16
Identity = 54/174 (31.03%), Postives = 85/174 (48.85%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKT---LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFAR--IGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L +RG +E +    L      + KT   LK+  GFDPTA  LHLG+ + +  +  F + GH+ + LIG  T  +GDP+GKS  R  L  + + +N     +    I       +  N +W    + LD    +G  A+  +  M+ ++   KR  ++  +S  EF Y L+QGYD
Sbjct:    9 LIKRGAVEILVEKELEEKLEKSAKTGVPLKIKAGFDPTAPDLHLGHTVLLHKMRQFQQLGHEVIFLIGDFTGMIGDPTGKSETRKALSREDVLRNAETYKEQVFKILDPEKTRVAFNSEW---LAKLDAGGMIGLAAKYTVARMLERDDFGKRFANQLPISIHEFLYPLIQGYD 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PROMM (Tyrosyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9313) GN=tyrS PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.006e-15
Identity = 53/161 (32.92%), Postives = 74/161 (45.96%), Query Frame = 3
Query:  306 ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNIL----------GISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            A    + L+V  G DPT   +HLG+ +    L  F   GH AV +IG  TAR+GDP+GKS  R +L  + +E N               K          + +  N +W  D    + +  +G  A +G M+AKE    R  S   ++  EF Y LLQGYD
Sbjct:   39 AREQNRPLRVKLGIDPTGRDIHLGHSILFRKLRAFQDAGHTAVLIIGDFTARIGDPTGKSSTRVQLTSEQIEANATTYLAQLGQGQSAEKALLDFTTPGRLEVRRNTEWLADLDLPEVIGLLGT-ATVGQMLAKEDFGNRYGSGVPIALHEFLYPLLQGYD 198          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_PROMP1.552e-1633.69Tyrosyl-tRNA synthetase OS=Prochlorococcus marinus... [more]
SYY_NITEU1.552e-1630.77Tyrosyl-tRNA synthetase OS=Nitrosomonas europaea G... [more]
SYY_GLOVI1.552e-1633.77Tyrosyl-tRNA synthetase OS=Gloeobacter violaceus G... [more]
SYY_PROMA2.027e-1633.74Tyrosyl-tRNA synthetase OS=Prochlorococcus marinus... [more]
SYY_COLP32.647e-1630.54Tyrosyl-tRNA synthetase OS=Colwellia psychrerythra... [more]
SYY_SYNY34.515e-1632.26Tyrosyl-tRNA synthetase OS=Synechocystis sp. (stra... [more]
SYY_BDEBA4.515e-1633.33Tyrosyl-tRNA synthetase OS=Bdellovibrio bacteriovo... [more]
SYY2_BACLD4.515e-1628.35Tyrosyl-tRNA synthetase 2 OS=Bacillus licheniformi... [more]
SYY_GEOSL5.897e-1631.03Tyrosyl-tRNA synthetase OS=Geobacter sulfurreducen... [more]
SYY_PROMM1.006e-1532.92Tyrosyl-tRNA synthetase OS=Prochlorococcus marinus... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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