CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY2_CLOAB (Tyrosyl-tRNA synthetase 2 OS=Clostridium acetobutylicum GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.006e-15
Identity = 50/170 (29.41%), Postives = 82/170 (48.24%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKT---LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            ++G  E I +  L+      EK    L V  G DP+A  +HLG+ + +  L      GH+ V +IG  T  +GDP+GKS  R +L    + KN     K    I   +   +  N  W +  +F + ++   ++  +  M+ +E  KKR +++Q +   EF Y L+Q YD
Sbjct:   12 KKGAEEIIDAKELKEKLIKAEKENTQLVVKLGLDPSAPDIHLGHAVVLRKLKQLQDLGHKIVIIIGDFTGMIGDPTGKSKTRKQLSSQQVMKNAETYEKQIFKILDRNKTDLRFNSQWLEKLNFKEVIELASKYT-VARMLEREDFKKRFKNQQSIGIHEFFYPLMQAYD 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SULDN (Tyrosyl-tRNA synthetase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=tyrS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.314e-15
Identity = 53/170 (31.18%), Postives = 82/170 (48.24%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASS---NEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG  E I    +  L  +     +T  V  GFDPTA  LHLG+ + +  L+ F + G +   LIG  TA++GDPSGKS  R  L  + + +N     +    I  +S   ++ N +W         +     F  +  M+ ++   KR +S   ++ +EF Y LLQGYD
Sbjct:   10 QRGCAEIIDEPRVEKLLKAYFEKGETYTVKAGFDPTAPDLHLGHTVLLQKLAIFQKYGARVQFLIGDFTAQIGDPSGKSATRKILSTEDILENAKSYKEQVFKILDASKTDVVFNSEWLNALGASGMITLTTTF-NVARMLERDDFDKRYKSGTSIAISEFLYPLLQGYD 178          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_RALEJ (Tyrosyl-tRNA synthetase OS=Ralstonia eutropha (strain JMP134) GN=tyrS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.927e-15
Identity = 55/180 (30.56%), Postives = 89/180 (49.44%), Query Frame = 3
Query:  234 PNVVDILE--RRGLLES-ITSDNLRSLASSNEK--TLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            P+V+  LE  +RG  E  I ++ L+ LA S      L++  G DPTA  +H+G+ + +  L      GHQ + LIG  T+ +GDPSG++  RP L  + +E N     +  S +   +   I  N +W         ++   ++  +  M+ ++   KR  S   +S  EF Y L+QGYD
Sbjct:   16 PSVMHALEVSKRGCDELLIEAEWLQKLARSEATGVPLRIKLGLDPTAPDIHIGHTVVLNKLRQLQDLGHQVIFLIGDFTSTIGDPSGRNSTRPPLTREQIEANAQTYYRQASLVLDPARTEIRYNSEWCDPLGARGMIQLAAKYT-VARMMERDDFTKRFRSGIPISVHEFLYPLMQGYD 194          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BURP1 (Tyrosyl-tRNA synthetase OS=Burkholderia pseudomallei (strain 1710b) GN=tyrS PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.927e-15
Identity = 50/170 (29.41%), Postives = 83/170 (48.82%), Query Frame = 3
Query:  258 RRGLLESITSDNL-RSLASS--NEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG+ E +  +   + LA S   +K L++  G DPTA  +HLG+ + +  +      GH  + LIG  T+ +GDPSG++  RP L  + +E N     +  + +   +   I  N +W         +K   R+  +  M+ +E   KR +    +S  EF Y L+QGYD
Sbjct:   25 KRGVDELLIEEEFAQKLAKSAATDKPLRIKLGLDPTAPDIHLGHTVVLNKMRQLQDLGHTVIFLIGDFTSLIGDPSGRNATRPPLTREQIESNAKTYFEQAALVLDRAKTEIRYNSEWSMPLGADGMIKLASRYT-VARMLEREDFTKRFQGGIPISIHEFLYPLMQGYD 193          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY2_BACSU (Tyrosyl-tRNA synthetase 2 OS=Bacillus subtilis GN=tyrS2 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.927e-15
Identity = 43/144 (29.86%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  327 LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            LK+  G DP+A  +HLG+ + +  L  F   GH    LIG  T ++GDP+GKS  R +L  + ++ N     + F  +     V +  N  W K  +  D ++  G+   +  ++ ++  ++R+  ++ +S  EF Y L+QGYD
Sbjct:   50 LKIKLGLDPSAPDVHLGHTVVLNKLRQFQENGHIVQLLIGDFTGKIGDPTGKSAARKQLTDEEVQHNAKTYFEQFGKVLDPEKVELHYNSKWLKTLNLEDVIELAGKIT-VARLMERDDFEERIAMQKPISLHEFFYPLMQGYD 192          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_THIDA (Tyrosyl-tRNA synthetase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tyrS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.822e-15
Identity = 43/146 (29.45%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  321 KTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            + L++  GFDPTA  LHLG+ + +  L  F   GH+ V LIG  T  +GDP+GK+  RP L  + + +N     +    +   +   +  N +W +    +  ++       +  M+ ++  +KR  S++ ++  EF Y L+QGYD
Sbjct:   29 RPLRIKAGFDPTAPDLHLGHTVLLNKLRQFQVLGHRIVFLIGDFTGMIGDPTGKNATRPPLTREAVAENAKTYQEQVFKVLDPALTEVRFNSEWMEGLGSVGMIRLAATHT-VARMLERDDFQKRYSSQKPIAIHEFLYPLIQGYD 173          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_THEEB (Tyrosyl-tRNA synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.822e-15
Identity = 50/160 (31.25%), Postives = 78/160 (48.75%), Query Frame = 3
Query:  288 DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFG---SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +NL +     ++ L++  G DPT   +HLG+ + +  L  F   GH AV +IG  TA++GDP+GKS  R +L  + +  N+    +    I        + I  N +W         L+ +G    +G M+AKE   +R   E  +   EF Y L+QGYD
Sbjct:   31 ENLWAYLRQTQRPLRIKFGIDPTGSEIHLGHSIVLRKLRQFQDAGHCAVLIIGDFTAQIGDPTGKSEVRKQLTPEEVAANVQTYLEQVRPILDFETPGRLEIRYNSEWLAKLDLRKVLELLGTMT-VGQMLAKEGFAERYAKETPIFLHEFLYPLMQGYD 189          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SHEON (Tyrosyl-tRNA synthetase OS=Shewanella oneidensis GN=tyrS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.822e-15
Identity = 55/168 (32.74%), Postives = 80/168 (47.62%), Query Frame = 3
Query:  258 RRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RRG  E +  SD L  L     + L++  G DPTA  +HLG+ + +  L  F   GH+ + LIG  T  VGDPSGK+  RP L  + +  N     +    I   +   I  N  W +       ++   +   +  M+ ++  KKR  S Q ++  EF Y LLQGYD
Sbjct:   12 RRGTDEILLESDLLEKLKKG--RPLRIKLGADPTAPDIHLGHTVILNKLRLFQELGHEVIFLIGDFTGMVGDPSGKNSTRPPLTREQVLANAETYKEQVYKILDPAKTRIEFNSSWLEPLGAAGMIRLASQ-QTVARMMERDDFKKRYASGQSIAIHEFMYPLLQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BURPS (Tyrosyl-tRNA synthetase OS=Burkholderia pseudomallei GN=tyrS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.822e-15
Identity = 50/170 (29.41%), Postives = 82/170 (48.24%), Query Frame = 3
Query:  258 RRGLLESITSDNL-RSLASS--NEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG+ E +  +   + LA S   +K L++  G DPTA  +HLG+ + +  +      GH  + LIG  T+ +GDPSG++  RP L  + +E N     +  + +       I  N +W         +K   R+  +  M+ +E   KR +    +S  EF Y L+QGYD
Sbjct:   25 KRGVDELLIEEEFAQKLAKSAATDKPLRIKLGLDPTAPDIHLGHTVVLNKMRQLQDLGHTVIFLIGDFTSLIGDPSGRNATRPPLTREQIESNAKTYFEQAALVLDREKTEIRYNSEWSMPLGADGMIKLASRYT-VARMLEREDFTKRFQGGIPISIHEFLYPLMQGYD 193          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY2_VIBCH (Tyrosyl-tRNA synthetase 2 OS=Vibrio cholerae GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.992e-15
Identity = 51/167 (30.54%), Postives = 79/167 (47.31%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG+ E I  + L +    N + L++  G DPTA  +HLG+ + +  L  F   GH    LIG  T  VGDP+GK+  RP L  + + +N     +    I   +   I  N +W         ++       +  M+ ++  KKR  + Q ++  EF Y LLQGYD
Sbjct:   12 KRGVEELIPEEELIAKLKEN-RPLRIKLGADPTAPDIHLGHTVILNKLRTFQDLGHDVTFLIGDFTGMVGDPTGKNTTRPPLTREDVLRNAETYKQQVFKILDPAKTKIQFNSEWLSKLGAEGMIRLASN-QTVARMLERDDFKKRYNNGQPIAIHEFMYPLLQGYD 176          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY2_CLOAB1.006e-1529.41Tyrosyl-tRNA synthetase 2 OS=Clostridium acetobuty... [more]
SYY_SULDN1.314e-1531.18Tyrosyl-tRNA synthetase OS=Sulfurimonas denitrific... [more]
SYY_RALEJ2.927e-1530.56Tyrosyl-tRNA synthetase OS=Ralstonia eutropha (str... [more]
SYY_BURP12.927e-1529.41Tyrosyl-tRNA synthetase OS=Burkholderia pseudomall... [more]
SYY2_BACSU2.927e-1529.86Tyrosyl-tRNA synthetase 2 OS=Bacillus subtilis GN=... [more]
SYY_THIDA3.822e-1529.45Tyrosyl-tRNA synthetase OS=Thiobacillus denitrific... [more]
SYY_THEEB3.822e-1531.25Tyrosyl-tRNA synthetase OS=Thermosynechococcus elo... [more]
SYY_SHEON3.822e-1532.74Tyrosyl-tRNA synthetase OS=Shewanella oneidensis G... [more]
SYY_BURPS3.822e-1529.41Tyrosyl-tRNA synthetase OS=Burkholderia pseudomall... [more]
SYY2_VIBCH4.992e-1530.54Tyrosyl-tRNA synthetase 2 OS=Vibrio cholerae GN=ty... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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