CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SYNJA (Tyrosyl-tRNA synthetase OS=Synechococcus sp. (strain JA-3-3Ab) GN=tyrS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.520e-15
Identity = 56/180 (31.11%), Postives = 86/180 (47.78%), Query Frame = 3
Query:  234 PNVVDILERRGLLESITSDN--LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFG---SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            P + +I +R G+ E        L    ++ ++ L+V  G DPT   LHLG+ + +  L  F   GH A+ LIG  TA VGDP+G+S  RP L    +E+N     +    I        + +  N +W    +  + ++   +   +G M+AKE   +R  S   +   EF Y LLQGYD
Sbjct:   19 PRIAEITQR-GVAEVFPGGAAALAERLATTDRPLRVKLGIDPTRPDLHLGHAVVLRKLRQFQDAGHVAILLIGDFTALVGDPTGQSEARPRLTPAEVEENARTYLEQAGKILDFETPGRLEVRRNSEWLARLTLSELIELQAQMT-VGQMLAKEDFAQRYRSGTPIYLHEFLYPLLQGYD 196          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SYNP6 (Tyrosyl-tRNA synthetase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 49/159 (30.82%), Postives = 77/159 (48.43%), Query Frame = 3
Query:  291 NLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKN---ILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +L +     ++ L++  G DPT   +HLG+ +    L  F   GH AV +IG  TAR+GDP+GKS  R +L  + +++N    L   +          + I  N +W         L+ +G    +G M+AKE   +R +    +   EF Y L+QGYD
Sbjct:   28 SLLARLQQGDRPLRIKLGIDPTGSDIHLGHSIIFRKLRQFQDAGHTAVLIIGDFTARIGDPTGKSEVRRQLTAEDVQRNAETYLDQLRPILDFETPGRLEIRYNSEWLAGLDLAKILELLGTMT-VGQMLAKEGFSERYDKGTPVYLHEFLYPLMQGYD 185          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SYNJB (Tyrosyl-tRNA synthetase OS=Synechococcus sp. GN=tyrS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 57/182 (31.32%), Postives = 87/182 (47.80%), Query Frame = 3
Query:  228 RHPNVVDILERRGLLESITSDN--LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFG---SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            R P +  I+ER G+ E        L    +  ++ L+V  G DPT   LHLG+ + +  L  F   GH A+ LIG  TA VGDP+G+S  RP L    +E+N     +    I        + +  N +W    +  + ++   +   +G M+AKE   +R ++   +   EF Y LLQGYD
Sbjct:   13 RDPLIAQIVER-GVAEIFPGGAAALAERLAQADRPLRVKLGIDPTRPDLHLGHSVVLRKLRQFQDAGHVAILLIGDFTALVGDPTGQSEARPRLTPAEVEENARTYLEQAGKILDFETPGRLEVRRNSEWLAHLTLSELIELQAQMT-VGQMLAKEDFAQRYQAGTPVYLHEFLYPLLQGYD 192          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SYNE7 (Tyrosyl-tRNA synthetase OS=Synechococcus elongatus (strain PCC 7942) GN=tyrS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 49/159 (30.82%), Postives = 77/159 (48.43%), Query Frame = 3
Query:  291 NLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKN---ILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +L +     ++ L++  G DPT   +HLG+ +    L  F   GH AV +IG  TAR+GDP+GKS  R +L  + +++N    L   +          + I  N +W         L+ +G    +G M+AKE   +R +    +   EF Y L+QGYD
Sbjct:   28 SLLARLQQGDRPLRIKLGIDPTGSDIHLGHSIIFRKLRQFQDAGHTAVLIIGDFTARIGDPTGKSEVRRQLTAEDVQRNAETYLDQLRPILDFETPGRLEIRYNSEWLAGLDLAKILELLGTMT-VGQMLAKEGFSERYDKGTPVYLHEFLYPLMQGYD 185          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SALRD (Tyrosyl-tRNA synthetase OS=Salinibacter ruber (strain DSM 13855) GN=tyrS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 49/170 (28.82%), Postives = 83/170 (48.82%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKT---LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            RRG  E +  D L     ++ +T   L V  G DP+   LHLG+ + +  L  F   GH+AV ++G  T  +GDPSG+S  RP+L ++   ++     +  + +   +   I  N +W  +  F D ++   +   +  M+ ++   +R E+ Q +S  EF Y L Q  D
Sbjct:   14 RRGAEEIVPEDELAEKLRTSRETDTPLTVKLGCDPSRPDLHLGHTVVLRKLRQFQDFGHRAVLIVGDFTGMIGDPSGRSKTRPQLTLEETREHGQSYYEQATRVLDPNKTEIRYNSEWLDEMRFSDVIELAAQ-QTVAQMLKRDDFNERYEAGQPISLHEFLYPLAQARD 182          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_DEIRA (Tyrosyl-tRNA synthetase OS=Deinococcus radiodurans GN=tyrS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 50/171 (29.24%), Postives = 83/171 (48.54%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGS--SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L +RG+++ ++ ++L+      E  L+V  G DPT   LHLG+ + +  +  F   GH+ + LIG  TA +GDPSGKS  RP L ++    N          I       + I  N +W +   + D +    ++  +  ++ ++   KRL +   +S  E  Y L QGYD
Sbjct:   18 LLKRGVVDLVSEEDLKRKIEKGEP-LRVKLGADPTRPDLHLGHAVILRKMRQFQDLGHKVIMLIGDFTATIGDPSGKSKTRPPLSLEEARANAESYLAQCRLILRQEPEALEIRYNSEWLEQLGYKDIIGLAAKYT-VARILERDDFTKRLSAGTPISMHELLYPLTQGYD 186          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY2_VIBPA (Tyrosyl-tRNA synthetase 2 OS=Vibrio parahaemolyticus GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 52/168 (30.95%), Postives = 81/168 (48.21%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNE-KTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG+ E I  + L  +A   E + L++  G DPTA  +HLG+ +    L  F   GH+   LIG  TA VGDP+GK+  RP L  + + +N     +    I   +   I  N +W  +      ++       +  M+ ++  KKR    Q ++  EF Y LLQG+D
Sbjct:   12 KRGVEELIPEEEL--IAKLKEGRPLRIKLGADPTAPDIHLGHTVIFNKLRLFQELGHEVTFLIGDFTAMVGDPTGKNTTRPPLSREDVLRNAETYKEQVFKILDPAKTKIQFNSEWLSELGAEGMIRLAAN-QTVARMLERDDFKKRYAGGQPIAIHEFMYPLLQGWD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BURMA (Tyrosyl-tRNA synthetase OS=Burkholderia mallei GN=tyrS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.112e-14
Identity = 48/164 (29.27%), Postives = 78/164 (47.56%), Query Frame = 3
Query:  267 LLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L+E   +  L   A++  K L++  G DPTA  +HLG+ + +  +      GH  + LIG  T+ +GDPSG++  RP L  + +E N     +  + +       I  N +W         +K   R+  +  M+ +E   KR +    +S  EF Y L+QGYD
Sbjct:   32 LIEEEFAQKLAKSAATG-KPLRIKLGLDPTAPDIHLGHTVVLNKMRQLQDLGHTVIFLIGDFTSLIGDPSGRNATRPPLTREQIESNAKTYFEQAALVLDREKTEIRYNSEWSMPLGADGMIKLASRYT-VARMLEREDFTKRFQGGIPISIHEFLYPLMQGYD 193          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_AQUAE (Tyrosyl-tRNA synthetase OS=Aquifex aeolicus GN=tyrS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.112e-14
Identity = 50/184 (27.17%), Postives = 84/184 (45.65%), Query Frame = 3
Query:  207 PQTQTHGRHPNVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            P+ Q        V+I+E   LL+ +             + L+V  GFDPTA  LHLG+++ +  L  F + GH+   +IG  TA +GDP+G+S  RP L  + + +N          +       ++ N  W ++      ++   ++  +  M+ +E   KR +    +   EF Y LLQ YD
Sbjct:    3 PEEQLRIIKEGTVEIIEEEELLKKLKEG----------RPLRVKAGFDPTAPDLHLGHVVLLQKLRQFQQLGHEVFFIIGDFTAMIGDPTGRSQTRPPLSREQVLENAKTYEHQVFKVLIPEKTTVVFNSTWLEELGTKGLIELCAKYT-VARMLEREDFSKRFKEGIPIYIHEFIYPLLQAYD 175          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CAMJE (Tyrosyl-tRNA synthetase OS=Campylobacter jejuni GN=tyrS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.452e-14
Identity = 51/174 (29.31%), Postives = 85/174 (48.85%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASS---NEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFST----IFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG  E I  + + +L  +     +   +  GFDPTA  LHLG+ + +  +++  + G     LIG  T ++GDPSGKS  R +LD    ++ +L  +KT+ T    +       I  N  W  +      ++    F+ +  M+ ++   KR + +  +S  EF Y LLQGYD
Sbjct:   11 KRGCAELIDEERIENLIKNYYEKGENFFIKAGFDPTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLD----KEQVLINAKTYKTQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFS-VARMLERDDFTKRFKEQSPISICEFLYPLLQGYD 179          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_SYNJA6.520e-1531.11Tyrosyl-tRNA synthetase OS=Synechococcus sp. (stra... [more]
SYY_SYNP68.515e-1530.82Tyrosyl-tRNA synthetase OS=Synechococcus sp. (stra... [more]
SYY_SYNJB8.515e-1531.32Tyrosyl-tRNA synthetase OS=Synechococcus sp. GN=ty... [more]
SYY_SYNE78.515e-1530.82Tyrosyl-tRNA synthetase OS=Synechococcus elongatus... [more]
SYY_SALRD8.515e-1528.82Tyrosyl-tRNA synthetase OS=Salinibacter ruber (str... [more]
SYY_DEIRA8.515e-1529.24Tyrosyl-tRNA synthetase OS=Deinococcus radiodurans... [more]
SYY2_VIBPA8.515e-1530.95Tyrosyl-tRNA synthetase 2 OS=Vibrio parahaemolytic... [more]
SYY_BURMA1.112e-1429.27Tyrosyl-tRNA synthetase OS=Burkholderia mallei GN=... [more]
SYY_AQUAE1.112e-1427.17Tyrosyl-tRNA synthetase OS=Aquifex aeolicus GN=tyr... [more]
SYY_CAMJE1.452e-1429.31Tyrosyl-tRNA synthetase OS=Campylobacter jejuni GN... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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