CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BURTA (Tyrosyl-tRNA synthetase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=tyrS PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.452e-14
Identity = 44/151 (29.14%), Postives = 73/151 (48.34%), Query Frame = 3
Query:  306 ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +++  K L++  G DPTA  +HLG+ + +  +      GH  + LIG  T+ +GDPSG++  RP L  + +E N     +  + +       I  N +W         +K   R+  +  M+ +E   KR +    +S  EF Y L+QGYD
Sbjct:   44 SAATGKPLRIKLGLDPTAPDIHLGHTVVLNKMRQLQDLGHTVIFLIGDFTSLIGDPSGRNATRPPLTREQIESNAKTYFEQAALVLDREKTEIRYNSEWSMPLGADGMIKLASRYT-VARMLEREDFTKRFQGGIPISIHEFLYPLMQGYD 193          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_THEMA (Tyrosyl-tRNA synthetase OS=Thermotoga maritima GN=tyrS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.897e-14
Identity = 52/184 (28.26%), Postives = 84/184 (45.65%), Query Frame = 3
Query:  207 PQTQTHGRHPNVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            P+ Q      NVVD++    LL+ I            +  L+V  G DP+   LHLG+ + +  L  F   GH  V +IG  TAR+GDPSG++  RP L  + + +N     +    I       +  N +W    +F D +    ++  +  M+ ++   KR +    ++ +EF Y L Q YD
Sbjct:    3 PEEQVKILKRNVVDLISEEELLDRI----------KRKGKLRVKLGVDPSRPDLHLGHAVVLRKLREFQDLGHTVVLIIGDFTARIGDPSGRNETRPMLTKEEVLENAKTYQEQAFKILDPKRTELRFNGEWLDRMTFADVIILASKYT-VARMLERDDFAKRFKEGIPIAISEFLYPLAQAYD 175          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_GEOMG (Tyrosyl-tRNA synthetase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=tyrS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.897e-14
Identity = 49/170 (28.82%), Postives = 80/170 (47.06%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKT---LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG  E +    L      +  T   L++  GFDPTA  LHLG+ + +  +  F + GH+   LIG  T  +GDP+GKS  R  L  + + KN     +    I       ++ N +W    +  D +    + + +  M+ ++   KR  ++  +S  EF Y L+QGYD
Sbjct:   11 KRGATEILLEKELEEKIEKSLSTGVPLRIKAGFDPTAPDLHLGHTVLLHKMRQFQQLGHEVCFLIGDFTGMIGDPTGKSETRKALTREDVLKNAETYKEQVFKILDPKKTRVVFNSEWLGKMTASDMIGLAAQ-STVARMLERDDFGKRFANQLPISIHEFLYPLIQGYD 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CAMJR (Tyrosyl-tRNA synthetase OS=Campylobacter jejuni (strain RM1221) GN=tyrS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.897e-14
Identity = 51/174 (29.31%), Postives = 84/174 (48.28%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASS---NEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFST----IFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG  E I  + +  L  +     +   +  GFDPTA  LHLG+ + +  +++  + G     LIG  T ++GDPSGKS  R +LD    ++ +L  +KT+ T    +       I  N  W  +      ++    F+ +  M+ ++   KR + +  +S  EF Y LLQGYD
Sbjct:   11 KRGCAELIDEERIEKLIKNYYEKGENFFIKAGFDPTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLD----KEQVLINAKTYETQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFS-VARMLERDDFTKRFKEQSPISICEFLYPLLQGYD 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ANAVT (Tyrosyl-tRNA synthetase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tyrS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.897e-14
Identity = 53/162 (32.72%), Postives = 81/162 (50.00%), Query Frame = 3
Query:  288 DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKN---ILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFA--RIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            ++L    ++ ++ L+V  G DPT   +HLG+ + +  L  F   GH AV +IG  TAR+GDP+GKS  R +L  + +++N    L   +          + +  N +W    S LD  K     A   +G M+AKE    R + E  +   EF Y L+QGYD
Sbjct:   27 ESLEKRLATTDRPLRVKYGIDPTGADIHLGHSIPMRKLRGFQDAGHTAVLIIGDFTARIGDPTGKSEMRRQLTEEDVKQNAQTYLDQVRPILDFDTPGRLEVRYNSEW---LSRLDLGKITELLATMTVGQMLAKEGFADRYKKENPIFLHEFLYPLMQGYD 185          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ANASP (Tyrosyl-tRNA synthetase OS=Anabaena sp. (strain PCC 7120) GN=tyrS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.897e-14
Identity = 53/162 (32.72%), Postives = 81/162 (50.00%), Query Frame = 3
Query:  288 DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKN---ILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFA--RIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            ++L    ++ ++ L+V  G DPT   +HLG+ + +  L  F   GH AV +IG  TAR+GDP+GKS  R +L  + +++N    L   +          + +  N +W    S LD  K     A   +G M+AKE    R + E  +   EF Y L+QGYD
Sbjct:   27 ESLEKRLATTDRPLRVKYGIDPTGADIHLGHSIPMRKLRGFQDAGHTAVLIIGDFTARIGDPTGKSEMRRQLTEEDVKQNAQTYLDQVRPILDFDTPGRLEVRYNSEW---LSRLDLGKITELLATMTVGQMLAKEGFADRYKKENPIFLHEFLYPLMQGYD 185          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_RALSO (Tyrosyl-tRNA synthetase OS=Ralstonia solanacearum GN=tyrS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.478e-14
Identity = 42/144 (29.17%), Postives = 72/144 (50.00%), Query Frame = 3
Query:  327 LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            L++  G DPTA  +H+G+ + +  +      GHQ + LIG  T+ +GDPSG++  RP L  + +E N     +  S +   S   I  N +W         ++   ++  +  M+ ++   KR ++   +S  EF Y L+QGYD
Sbjct:   31 LRIKLGLDPTAPDIHIGHTVVLNKMRQLQDLGHQVIFLIGDFTSTIGDPSGRNATRPPLTREQIEANAQTYYRQASMVLDPSKTEIRYNSEWCDPLGARGIIQLAAKYT-VARMMERDDFTKRYKAGVPISVHEFLYPLMQGYD 173          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY2_VIBVY (Tyrosyl-tRNA synthetase 2 OS=Vibrio vulnificus (strain YJ016) GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.478e-14
Identity = 52/168 (30.95%), Postives = 80/168 (47.62%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNE-KTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG+ E I  + L  +A   E + L++  G DPTA  +HLG+ + +  L  F   GH    LIG  T  VGDP+GK+  RP L  + + +N     +    I   +   I  N +W  +      ++       +  M+ ++  KKR    Q ++  EF Y LLQGYD
Sbjct:   12 KRGVEELIPEEEL--IAKLKEGRPLRIKLGADPTAPDIHLGHTVILNKLRAFQDLGHDVTFLIGDFTGMVGDPTGKNSTRPPLTREDVLRNAETYKQQVFKILDPAKTKIQFNSEWLSELGAEGMIRLAAN-QTVARMLERDDFKKRYAGGQPIAIHEFMYPLLQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY2_VIBVU (Tyrosyl-tRNA synthetase 2 OS=Vibrio vulnificus GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.478e-14
Identity = 52/168 (30.95%), Postives = 80/168 (47.62%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNE-KTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG+ E I  + L  +A   E + L++  G DPTA  +HLG+ + +  L  F   GH    LIG  T  VGDP+GK+  RP L  + + +N     +    I   +   I  N +W  +      ++       +  M+ ++  KKR    Q ++  EF Y LLQGYD
Sbjct:   12 KRGVEELIPEEEL--IAKLKEGRPLRIKLGADPTAPDIHLGHTVILNKLRAFQDLGHDVTFLIGDFTGMVGDPTGKNSTRPPLTREDVLRNAETYKQQVFKILDPAKTKIQFNSEWLSELGAEGMIRLAAN-QTVARMLERDDFKKRYAGGQPIAIHEFMYPLLQGYD 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PHOPR (Tyrosyl-tRNA synthetase OS=Photobacterium profundum GN=tyrS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.236e-14
Identity = 50/167 (29.94%), Postives = 77/167 (46.11%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG+ E I  + L +    N + L++  G DPTA  +HLG+ + +  L  F   GH    LIG  T  VGDP+GK+  RP L  + +  N     +    I   +   I  N  W  +      ++       +  M+ ++  KKR    + ++  EF Y LLQGYD
Sbjct:   12 KRGIDELIPEEELIAKLKEN-RPLRIKLGADPTAPDIHLGHTVILNKLRTFQELGHDVTFLIGDFTGMVGDPTGKNTTRPPLTREDVLANAETYKEQVFKILDPAKTKIEFNSTWLSELGAEGMIRLASN-QTVARMLERDDFKKRYNGGRPIAIHEFMYPLLQGYD 176          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_BURTA1.452e-1429.14Tyrosyl-tRNA synthetase OS=Burkholderia thailanden... [more]
SYY_THEMA1.897e-1428.26Tyrosyl-tRNA synthetase OS=Thermotoga maritima GN=... [more]
SYY_GEOMG1.897e-1428.82Tyrosyl-tRNA synthetase OS=Geobacter metallireduce... [more]
SYY_CAMJR1.897e-1429.31Tyrosyl-tRNA synthetase OS=Campylobacter jejuni (s... [more]
SYY_ANAVT1.897e-1432.72Tyrosyl-tRNA synthetase OS=Anabaena variabilis (st... [more]
SYY_ANASP1.897e-1432.72Tyrosyl-tRNA synthetase OS=Anabaena sp. (strain PC... [more]
SYY_RALSO2.478e-1429.17Tyrosyl-tRNA synthetase OS=Ralstonia solanacearum ... [more]
SYY2_VIBVY2.478e-1430.95Tyrosyl-tRNA synthetase 2 OS=Vibrio vulnificus (st... [more]
SYY2_VIBVU2.478e-1430.95Tyrosyl-tRNA synthetase 2 OS=Vibrio vulnificus GN=... [more]
SYY_PHOPR3.236e-1429.94Tyrosyl-tRNA synthetase OS=Photobacterium profundu... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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