CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BORPE (Tyrosyl-tRNA synthetase OS=Bordetella pertussis GN=tyrS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.236e-14
Identity = 51/172 (29.65%), Postives = 81/172 (47.09%), Query Frame = 3
Query:  252 LERRGLLESIT-SDNLRSLASSNEK--TLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            + RRG  E +  S+  R LA S      L++  G DPTA  +HLG+ + +  +      GH  + LIG  T+ +GDPSG++  RP L  + +E N        S +   +   I  N +W         ++   R+  +  M+ +E   +R +    ++  EF Y LLQGYD
Sbjct:   18 IARRGCDELLVESEFARKLARSRATGVPLRIKLGLDPTAPDIHLGHTVVLNKMRQLQDLGHNVIFLIGDFTSTIGDPSGRNSTRPPLTREQIETNAKTYYAQASLVLDPARTEIRYNSEWCDPLGARGMIQLASRYT-VARMMEREDFTRRFKGGVPIAVHEFLYPLLQGYD 188          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BORPA (Tyrosyl-tRNA synthetase OS=Bordetella parapertussis GN=tyrS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.236e-14
Identity = 51/172 (29.65%), Postives = 81/172 (47.09%), Query Frame = 3
Query:  252 LERRGLLESIT-SDNLRSLASSNEK--TLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            + RRG  E +  S+  R LA S      L++  G DPTA  +HLG+ + +  +      GH  + LIG  T+ +GDPSG++  RP L  + +E N        S +   +   I  N +W         ++   R+  +  M+ +E   +R +    ++  EF Y LLQGYD
Sbjct:   18 IARRGCDELLVESEFARKLARSRATGVPLRIKLGLDPTAPDIHLGHTVVLNKMRQLQDLGHNVIFLIGDFTSTIGDPSGRNSTRPPLTREQIETNAKTYYAQASLVLDPARTEIRYNSEWCDPLGARGMIQLASRYT-VARMMEREDFTRRFKGGVPIAVHEFLYPLLQGYD 188          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BORBR (Tyrosyl-tRNA synthetase OS=Bordetella bronchiseptica GN=tyrS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.236e-14
Identity = 51/172 (29.65%), Postives = 81/172 (47.09%), Query Frame = 3
Query:  252 LERRGLLESIT-SDNLRSLASSNEK--TLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            + RRG  E +  S+  R LA S      L++  G DPTA  +HLG+ + +  +      GH  + LIG  T+ +GDPSG++  RP L  + +E N        S +   +   I  N +W         ++   R+  +  M+ +E   +R +    ++  EF Y LLQGYD
Sbjct:   18 IARRGCDELLVESEFARKLACSRATGVPLRIKLGLDPTAPDIHLGHTVVLNKMRQLQDLGHNVIFLIGDFTSTIGDPSGRNSTRPPLTREQIETNAKTYYAQASLVLDPARTEIRYNSEWCDPLGARGMIQLASRYT-VARMMEREDFTRRFKGGVPIAVHEFLYPLLQGYD 188          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BORA1 (Tyrosyl-tRNA synthetase OS=Bordetella avium (strain 197N) GN=tyrS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.519e-14
Identity = 50/172 (29.07%), Postives = 82/172 (47.67%), Query Frame = 3
Query:  252 LERRGLLESIT-SDNLRSLASSNEK--TLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            + RRG  E +  S+  R LA S      L++  G DPTA  +HLG+ + +  +      GH  + LIG  T+ +GDPSG++  RP L  + +E N        S +   +   I  N +W         ++   R+  +  M+ +E   +R ++   ++  EF Y L+QGYD
Sbjct:   18 IARRGCDELLVESEFARKLARSRATGVPLRIKLGLDPTAPDIHLGHTVVLNKMRQLQDLGHTVIFLIGDFTSTIGDPSGRNSTRPPLTREQIEHNAKTYYAQASLVLDPARTEIRYNSEWCDPLGARGMIQLASRYT-VARMMEREDFTRRFKTGVPIAVHEFLYPLMQGYD 188          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BURS3 (Tyrosyl-tRNA synthetase OS=Burkholderia sp. (strain 383) GN=tyrS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.415e-14
Identity = 45/170 (26.47%), Postives = 79/170 (46.47%), Query Frame = 3
Query:  258 RRGLLESITSDNLRSLASSNEKT---LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +RG+ E +  +      + +  T   L++  G DPTA  +H+G+ + +  +      GH  + LIG  T+ +GDPSG++  RP L  + +E N     +  + +       I  N +W         +K   R+  +  ++ +E   KR +    +S  EF Y L+QGYD
Sbjct:   25 KRGVDELLVEEEFAQKLARSAATGTPLRIKLGLDPTAPDIHIGHTVVLNKMRQLQDLGHTVIFLIGDFTSLIGDPSGRNATRPPLTREQIESNAKTYFEQAALVLDRDKTEIRYNSEWSMPLGADGMIKLASRYT-VARILEREDFTKRFQGGVPISIHEFLYPLMQGYD 193          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SYNSC (Tyrosyl-tRNA synthetase OS=Synechococcus sp. (strain CC9605) GN=tyrS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.097e-13
Identity = 52/161 (32.30%), Postives = 76/161 (47.20%), Query Frame = 3
Query:  306 ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNI------LGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            A    + L+V  G DPT  ++HLG+ +    L  F   GH AV +IG  TAR+GDP+GKS  R +L  + +  N       LG  +   T          + +  N +W +       +  +G    +G M+AK+   KR  S   ++  EF Y LLQGYD
Sbjct:   39 AEKEGRPLRVKLGIDPTGSNIHLGHSILFRKLRAFQDGGHTAVLIIGDFTARIGDPTGKSATRVQLSKEQVAANASTYLRQLGQDQPKETALLDFETPGRLEVRYNSEWLEGMDLPAVIGLLGT-GTVGQMLAKDDFSKRYGSGTPIALHEFLYPLLQGYD 198          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SYNS9 (Tyrosyl-tRNA synthetase OS=Synechococcus sp. (strain CC9902) GN=tyrS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.097e-13
Identity = 52/161 (32.30%), Postives = 76/161 (47.20%), Query Frame = 3
Query:  306 ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNI------LGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            A +  + L+V  G DPT  ++HLG+ +    L  F   GH AV +IG  TAR+GDP+GKS  R +L  + +  N       LG  +   T          + +  N +W +       +  +G    +G M+AKE    R  S   ++  EF Y LLQGYD
Sbjct:   39 AEAEGRPLRVKLGIDPTGSNIHLGHSILFRKLRAFQDAGHIAVLIIGDFTARIGDPTGKSATRVQLSKNDVAVNASTYLRQLGQDQPKETALLDFETPGRLEVRYNSEWLEGMDLPAVIGLLGT-GTVGQMLAKEDFSNRYNSGTPIALHEFLYPLLQGYD 198          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_THIFE (Tyrosyl-tRNA synthetase OS=Thiobacillus ferrooxidans GN=tyrS PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.739e-13
Identity = 45/151 (29.80%), Postives = 71/151 (47.02%), Query Frame = 3
Query:  306 ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            A  + + L++  G DPTA  LHLG  + +     F   GH+ + +IG  TA +GDP+GKS+ R  L  + +  N          I       ++ N +W       + L Q+     +  M+ ++   KR  + Q ++  EF Y LLQGYD
Sbjct:   32 AQRDNRPLRIKLGMDPTAPDLHLGAYVLLHKARQFQDLGHRLLFVIGDFTAMIGDPTGKSVTRKALSREEVVANAATYRPQVFKILDPERTEVMFNSEWLGALR-PEELIQIAACYTVARMLERDDFNKRYSANQPIAIHEFLYPLLQGYD 181          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_HELPY (Tyrosyl-tRNA synthetase OS=Helicobacter pylori GN=tyrS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.739e-13
Identity = 47/155 (30.32%), Postives = 77/155 (49.68%), Query Frame = 3
Query:  294 LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            +R    +NE+ + V  GFDPTA  LHLG+ + I  L+   + G +   LIG  TA +GDP+GK+  R  L+ + + +N     +    I    +  +  N  W         ++   +F+ +  M+ ++   KR +  + +S  EF Y LLQGYD
Sbjct:   29 VRKYYETNERFI-VKAGFDPTAPDLHLGHTVLIQKLALLQQYGARVKFLIGDFTAMIGDPTGKNETRKPLNREQVLENAKTYEEQIYKILDEKHTEVCFNSTWLDALGAKGMIELCAKFS-VARMLERDDFTKRYKENRPISIVEFLYPLLQGYD 181          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SYNPX (Tyrosyl-tRNA synthetase OS=Synechococcus sp. (strain WH8102) GN=tyrS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.578e-13
Identity = 51/161 (31.68%), Postives = 75/161 (46.58%), Query Frame = 3
Query:  306 ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNI------LGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYD 758
            A    + L+V  G DPT  ++HLG+ +    L  F   GH AV +IG  TAR+GDP+GK   R +L  + +  N       LG  +   T          + +  N +W +       +  +G    +G M+AK+   KR  S   ++  EF Y LLQGYD
Sbjct:   39 AEKEGRPLRVKLGIDPTGSNIHLGHSILFRKLRAFQDAGHTAVLIIGDFTARIGDPTGKCATRVQLSKEDVAANASTYLRQLGQDQPKETALLDFETPGRLEVRYNSEWLEGMDLPAVIGLLGT-GTVGQMLAKDDFSKRYGSGTPIALHEFLYPLLQGYD 198          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_BORPE3.236e-1429.65Tyrosyl-tRNA synthetase OS=Bordetella pertussis GN... [more]
SYY_BORPA3.236e-1429.65Tyrosyl-tRNA synthetase OS=Bordetella parapertussi... [more]
SYY_BORBR3.236e-1429.65Tyrosyl-tRNA synthetase OS=Bordetella bronchisepti... [more]
SYY_BORA15.519e-1429.07Tyrosyl-tRNA synthetase OS=Bordetella avium (strai... [more]
SYY_BURS39.415e-1426.47Tyrosyl-tRNA synthetase OS=Burkholderia sp. (strai... [more]
SYY_SYNSC2.097e-1332.30Tyrosyl-tRNA synthetase OS=Synechococcus sp. (stra... [more]
SYY_SYNS92.097e-1332.30Tyrosyl-tRNA synthetase OS=Synechococcus sp. (stra... [more]
SYY_THIFE2.739e-1329.80Tyrosyl-tRNA synthetase OS=Thiobacillus ferrooxida... [more]
SYY_HELPY2.739e-1330.32Tyrosyl-tRNA synthetase OS=Helicobacter pylori GN=... [more]
SYY_SYNPX3.578e-1331.68Tyrosyl-tRNA synthetase OS=Synechococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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