CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECOLI (Tyrosyl-tRNA synthetase OS=Escherichia coli (strain K12) GN=tyrS PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECOLC (Tyrosyl-tRNA synthetase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECOL6 (Tyrosyl-tRNA synthetase OS=Escherichia coli O6 GN=tyrS PE=3 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECOK1 (Tyrosyl-tRNA synthetase OS=Escherichia coli O1:K1 / APEC GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    9 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 187
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECOHS (Tyrosyl-tRNA synthetase OS=Escherichia coli O9:H4 (strain HS) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECODH (Tyrosyl-tRNA synthetase OS=Escherichia coli (strain K12 / DH10B) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECOBW (Tyrosyl-tRNA synthetase OS=Escherichia coli (strain K12 / BW2952) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECO8A (Tyrosyl-tRNA synthetase OS=Escherichia coli O8 (strain IAI1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECO81 (Tyrosyl-tRNA synthetase OS=Escherichia coli O81 (strain ED1a) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183
[Close]
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECO7I (Tyrosyl-tRNA synthetase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_ECOLI2.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli (strai... [more]
SYY_ECOLC2.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli (strai... [more]
SYY_ECOL62.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli O6 GN=... [more]
SYY_ECOK12.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli O1:K1 ... [more]
SYY_ECOHS2.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli O9:H4 ... [more]
SYY_ECODH2.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli (strai... [more]
SYY_ECOBW2.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli (strai... [more]
SYY_ECO8A2.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli O8 (st... [more]
SYY_ECO812.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli O81 (s... [more]
SYY_ECO7I2.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli O7:K1 ... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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