CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECO5E (Tyrosyl-tRNA synthetase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECO57 (Tyrosyl-tRNA synthetase OS=Escherichia coli O157:H7 GN=tyrS PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECO55 (Tyrosyl-tRNA synthetase OS=Escherichia coli (strain 55989 / EAEC) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECO45 (Tyrosyl-tRNA synthetase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECO27 (Tyrosyl-tRNA synthetase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ECO24 (Tyrosyl-tRNA synthetase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CITK8 (Tyrosyl-tRNA synthetase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.815e-34
Identity = 76/180 (42.22%), Postives = 115/180 (63.89%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     DT+++ +  I K  +       G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF
Sbjct:    9 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEDTVQEWVDKIRKQVAPFLDFDCGDNSAIAANNYDWFGGMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDF 187          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ENT38 (Tyrosyl-tRNA synthetase OS=Enterobacter sp. (strain 638) GN=tyrS PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.677e-34
Identity = 75/180 (41.67%), Postives = 115/180 (63.89%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F   GH+ +AL+GGAT  +GDPS K+ ER     DT+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQEMGHKPIALVGGATGLIGDPSFKAAERKLNTEDTVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PECCP (Tyrosyl-tRNA synthetase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.802e-34
Identity = 76/180 (42.22%), Postives = 113/180 (62.78%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQ-GLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F   GH+ VAL+GGAT  +GDPS K+ ER     DT+ + +  I +  S       G ++ +  NNYDW+   + LDFL+ +G+   +  MI KE+VK+RL  +  G+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLIAQVTDEGALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQLAGHKPVALVGGATGLIGDPSFKATERKLNTADTVGEWVEKIRRQVSPFLDFDCGKNSAIAANNYDWFGGMNVLDFLRDIGKHFSVNQMINKEAVKQRLNRDDVGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LISMO (Tyrosyl-tRNA synthetase OS=Listeria monocytogenes GN=tyrS PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.802e-34
Identity = 75/179 (41.90%), Postives = 110/179 (61.45%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D LE RG +   T +  LR      EK + +YCG DP+ +S+H+G+L+  ++L  F   GH+ + L+GGAT  +GDPSGK  ER    ++ + KN+  +      IF   G+S   ++NNYDW KD S LDFL+  G+   + TM++K+ V  RL  E G+SFTEF+YQ+LQ  DF
Sbjct:    2 NIIDELEWRGAIYQQTDEEGLRKWVE--EKQISLYCGIDPSGDSMHIGHLIPFMILRRFQNAGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISKNVESLRVQLGKIFDFEGNSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLSKDIVASRL--EVGISFTEFAYQILQAMDF 176          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_ECO5E2.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli O157:H... [more]
SYY_ECO572.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli O157:H... [more]
SYY_ECO552.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli (strai... [more]
SYY_ECO452.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli O45:K1... [more]
SYY_ECO272.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli O127:H... [more]
SYY_ECO242.815e-3442.22Tyrosyl-tRNA synthetase OS=Escherichia coli O139:H... [more]
SYY_CITK82.815e-3442.22Tyrosyl-tRNA synthetase OS=Citrobacter koseri (str... [more]
SYY_ENT383.677e-3441.67Tyrosyl-tRNA synthetase OS=Enterobacter sp. (strai... [more]
SYY_PECCP4.802e-3442.22Tyrosyl-tRNA synthetase OS=Pectobacterium carotovo... [more]
SYY_LISMO4.802e-3441.90Tyrosyl-tRNA synthetase OS=Listeria monocytogenes ... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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