CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LISMH (Tyrosyl-tRNA synthetase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=tyrS PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.802e-34
Identity = 75/179 (41.90%), Postives = 110/179 (61.45%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D LE RG +   T +  LR     +EK + +YCG DP+ +S+H+G+L+  ++L  F   GH+ + L+GGAT  +GDPSGK  ER    ++ + KN+  +      IF   G S   ++NNYDW KD S LDFL+  G+   + TM++K+ V  RL  E G+SFTEF+YQ+LQ  DF
Sbjct:    2 NIIDELEWRGAIYQQTDEEGLRKWV--DEKQISLYCGIDPSGDSMHIGHLIPFMILRRFQNAGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISKNVESLRVQLGKIFDFEGDSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLSKDIVASRL--EVGISFTEFAYQILQAMDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LISMF (Tyrosyl-tRNA synthetase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=tyrS PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.802e-34
Identity = 75/179 (41.90%), Postives = 110/179 (61.45%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D LE RG +   T +  LR      EK + +YCG DP+ +S+H+G+L+  ++L  F   GH+ + L+GGAT  +GDPSGK  ER    ++ + KN+  +      IF   G+S   ++NNYDW KD S LDFL+  G+   + TM++K+ V  RL  E G+SFTEF+YQ+LQ  DF
Sbjct:    2 NIIDELEWRGAIYQQTDEEGLRKWVE--EKQISLYCGIDPSGDSMHIGHLIPFMILRRFQNAGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISKNVESLRVQLGKIFDFEGNSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLSKDIVASRL--EVGISFTEFAYQILQAMDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LISMC (Tyrosyl-tRNA synthetase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=tyrS PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.802e-34
Identity = 75/179 (41.90%), Postives = 110/179 (61.45%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D LE RG +   T +  LR      EK + +YCG DP+ +S+H+G+L+  ++L  F   GH+ + L+GGAT  +GDPSGK  ER    ++ + KN+  +      IF   G+S   ++NNYDW KD S LDFL+  G+   + TM++K+ V  RL  E G+SFTEF+YQ+LQ  DF
Sbjct:    2 NIIDELEWRGAIYQQTDEEGLRKWVE--EKQISLYCGIDPSGDSMHIGHLIPFMILRRFQNAGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISKNVESLRVQLGKIFDFEGNSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLSKDIVASRL--EVGISFTEFAYQILQAMDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BIFA0 (Tyrosyl-tRNA synthetase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=tyrS PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.802e-34
Identity = 83/182 (45.60%), Postives = 116/182 (63.74%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDP--SGKSIERPELDI-----DTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +V+D LE RGL+   T D  R   + N + +  YCGFDPTA SLH+GNL+ +I++      GH  +AL+GGAT  +GDP  SG+ I  P+ DI     + L   I GI +      GS+ V  ++NYDW    + LDFL+ +G+  R+GTMI+K+ V +RL SE+G+SFTEFSYQ+LQG D+
Sbjct:   14 SVLDELEWRGLISQST-DRDRLAHTLNGEPVHYYCGFDPTAPSLHIGNLVQLIIMRHLQEAGHHPIALVGGATGLIGDPRQSGERILNPK-DIVEQWCERLRIQIGGILEQE----GSNPVTFVSNYDWTATMNVLDFLRDIGKNFRVGTMISKDIVARRLNSEEGISFTEFSYQVLQGNDY 189          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LISIN (Tyrosyl-tRNA synthetase OS=Listeria innocua GN=tyrS PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.271e-34
Identity = 75/179 (41.90%), Postives = 109/179 (60.89%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D LE RG +   T +  LR      EK + +YCG DP+ +S+H+G+L+  ++L  F   GH+ + L+GGAT  +GDPSGK  ER    ++ + KN+  +      IF   G S   ++NNYDW KD S LDFL+  G+   + TM++K+ V  RL  E G+SFTEF+YQ+LQ  DF
Sbjct:    2 NIIDELEWRGAIYQQTDEEGLRKWVE--EKQISLYCGIDPSGDSMHIGHLIPFMILRRFQNAGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISKNVESLRVQLGKIFDFEGDSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLSKDIVASRL--EVGISFTEFAYQILQAMDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ERWT9 (Tyrosyl-tRNA synthetase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=tyrS PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.271e-34
Identity = 77/180 (42.78%), Postives = 114/180 (63.33%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDT----LEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +N  +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F   GH+ VAL+GGAT  +GDPS K+ ER     +T    +EK    ++   S   G ++ +  NNYDW+   + L FL+ +G+   +  MI KE+VK+RL   +QG+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDENALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQDAGHKPVALVGGATGLIGDPSFKAAERKLNTSETVNQWVEKIRQQVAPFLSFNCGDNSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ERWCT (Tyrosyl-tRNA synthetase OS=Erwinia carotovora subsp. atroseptica GN=tyrS PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.271e-34
Identity = 75/180 (41.67%), Postives = 115/180 (63.89%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQ-GLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F   GH+ VAL+GGAT  +GDPS K+ ER     +T+ + +  I +  S       G ++ +  NNYDW+ + + LDFL+ +G+   +  MI+KE+VK+RL  +  G+SFTEFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLIAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQLSGHKPVALVGGATGLIGDPSFKATERKLNTSETVGEWVEKIRRQVSPFLDFDCGKNSAIAANNYDWFGNMNVLDFLRDIGKHFSVNQMISKEAVKQRLNRDDVGISFTEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CHLMU (Tyrosyl-tRNA synthetase OS=Chlamydia muridarum GN=tyrS PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.271e-34
Identity = 77/176 (43.75%), Postives = 115/176 (65.34%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGS--SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++D L++RG+L++ +S  L SL +     +  Y GFDPTA SLH+G+ +GI  L      G   +AL+GGAT  +GDPSGKS+ER  LD    ++ +L  SK       +   ++ I+NN DW    S +DFL+ +G++ R+G+M+AK+ VK+R+ SE+G+S+TEFSY LLQ YDF
Sbjct:    4 LIDSLQKRGILDN-SSAGLESLTAP----VSAYLGFDPTAPSLHIGHWIGICFLRRLSAYGITPIALVGGATGMIGDPSGKSVERSLLD----QEQVLDNSKKIEVALANYLPDIRIVNNADWLGSLSMVDFLRDIGKYFRLGSMLAKDVVKQRVYSEEGISYTEFSYLLLQSYDF 170          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYYM_DROME (Probable tyrosyl-tRNA synthetase, mitochondrial OS=Drosophila melanogaster GN=CG16912 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.271e-34
Identity = 72/193 (37.31%), Postives = 118/193 (61.14%), Query Frame = 3
Query:  237 NVVDILER---RGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGS---------------SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++++ +R    G+     +  ++ L +  +++  +Y GFDPTA+SLH+GNLL I+ L    R GH+ +AL+GGAT  +GDPSG+  ER +L    +E N+  I +    +F +               + ++I+NN DW+ D   +DF+  +GR  R+G+M+++ SV+ RLESE G+SFTEF+YQ+ Q YD+
Sbjct:   27 NLLELTDRGFFHGIFPDTAAPRMKQLFTRGQQS--IYAGFDPTADSLHVGNLLVIMGLIHCQRAGHRPIALVGGATGLIGDPSGRKTERNQLGETVIETNLKAIEQQLRRVFENHENCLWDSKKQKLPLAPLIIVNNADWYADLQLIDFVANMGRHFRMGSMLSRSSVQSRLESEDGMSFTEFTYQIFQAYDW 217          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_DECAR (Tyrosyl-tRNA synthetase OS=Dechloromonas aromatica (strain RCB) GN=tyrS PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.191e-34
Identity = 76/178 (42.70%), Postives = 112/178 (62.92%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEK---NILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            ++  L  RGL+  IT D         E+++ +YCGFDPTA+SLHLG+L+ +++L  F   GH+ +AL+GGAT  +GDPS K+ ER     D +      I G  + F    G++  ++ NNYDW+   + L+F++ +G+   +  MI KESV++RL  E QG+S+TEFSY LLQGYDF
Sbjct:    6 LIQDLHDRGLIAQIT-DAAALDKLLTEESVTLYCGFDPTADSLHLGHLVPVLILKRFQEAGHKPIALVGGATGMIGDPSFKATERKLNTPDVIASWVGKIRGQVEPFLKFDGANAAIMANNYDWFGGMNCLEFMRDIGKHFSVNAMIKKESVQQRLTREDQGISYTEFSYSLLQGYDF 182          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_LISMH4.802e-3441.90Tyrosyl-tRNA synthetase OS=Listeria monocytogenes ... [more]
SYY_LISMF4.802e-3441.90Tyrosyl-tRNA synthetase OS=Listeria monocytogenes ... [more]
SYY_LISMC4.802e-3441.90Tyrosyl-tRNA synthetase OS=Listeria monocytogenes ... [more]
SYY_BIFA04.802e-3445.60Tyrosyl-tRNA synthetase OS=Bifidobacterium animali... [more]
SYY_LISIN6.271e-3441.90Tyrosyl-tRNA synthetase OS=Listeria innocua GN=tyr... [more]
SYY_ERWT96.271e-3442.78Tyrosyl-tRNA synthetase OS=Erwinia tasmaniensis (s... [more]
SYY_ERWCT6.271e-3441.67Tyrosyl-tRNA synthetase OS=Erwinia carotovora subs... [more]
SYY_CHLMU6.271e-3443.75Tyrosyl-tRNA synthetase OS=Chlamydia muridarum GN=... [more]
SYYM_DROME6.271e-3437.31Probable tyrosyl-tRNA synthetase, mitochondrial OS... [more]
SYY_DECAR8.191e-3442.70Tyrosyl-tRNA synthetase OS=Dechloromonas aromatica... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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