CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LACRD (Tyrosyl-tRNA synthetase OS=Lactobacillus reuteri (strain DSM 20016) GN=tyrS PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.070e-33
Identity = 73/176 (41.48%), Postives = 107/176 (60.80%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++++ LE RG +  +T +  LR L S  E  + +YCG DPT +SLH+G+L+  ++L  F   GH  V +IGG T  +GDPSG+  ER    +D +  N   ++     +FG+ N  I+NNY+W    S LDFL+  G+   I TM+ KE V  RL++  G+SFTEF+YQ+LQ  DF
Sbjct:    2 DILNELEWRGAINQVTDEEGLRKLTS--EDKIALYCGTDPTGDSLHIGHLIPFMILKRFQLAGHHPVIIIGGGTGAIGDPSGRKSERQLQTMDQVHHNEEALTAQMKKLFGTENFTIVNNYEWLSKISLLDFLRDYGKLFNINTMLNKEVVASRLDA--GISFTEFTYQILQSVDF 173          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ANADE (Tyrosyl-tRNA synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tyrS PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.070e-33
Identity = 74/178 (41.57%), Postives = 109/178 (61.24%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIS---KTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+++ L  R L+   T      LA      +  Y GFDPTA+SLH+G+LL ++ L+W  RCG   + ++GG T  VGDPSGK  ERP L ++ +++N+  I    + F +  G +   + NN DW +    ++FL+ VG+   +  M+AK+SVK R+ES  G+SFTEFSYQL+Q YDF
Sbjct:    3 NLLEALVPRSLVHDQTPGLQARLAQG---PITGYVGFDPTADSLHVGHLLAVMSLAWLQRCGGTPIIVVGGGTGMVGDPSGKRSERPVLSVEEIDRNVAAIRAQLERFVSFEGQNAARVRNNADWLRSIGLMEFLRDVGKHFTVNYMLAKDSVKGRMES--GISFTEFSYQLIQAYDF 175          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_SHIDS (Tyrosyl-tRNA synthetase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tyrS PE=3 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.397e-33
Identity = 75/180 (41.67%), Postives = 115/180 (63.89%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F + GH+ VAL+GGAT  +GDPS K+ ER     +T+++ +  I K  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  E QG+SF EFSY LLQGYDF
Sbjct:    5 NLIKQLQERGLVAQVTDEEALAERLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFIEFSYNLLQGYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_RHOS5 (Tyrosyl-tRNA synthetase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=tyrS PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.397e-33
Identity = 73/184 (39.67%), Postives = 116/184 (63.04%), Query Frame = 3
Query:  231 HP--NVVDILERRGLLESITSDNLRSLASSNEK-TLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            HP  + + +++ RG L   T  ++++L  +  K  +  Y G+D TA SLH+G+LL I++L W  + GH+ + L+GG T +VGDPS +S ERP L  + ++ NI G+ + F+       G++  ++LNN +W    ++LDFL+ +GR   +  M++ ESVK RL+ EQ LSF EF+Y +LQ YDF
Sbjct:    4 HPKSDFLRVMQERGYLADCT--DMQALDEAMSKGVVPAYIGYDATAASLHVGHLLNIMMLRWLQKTGHKPITLMGGGTTKVGDPSFRSEERPLLTPEKIDANIAGMKQVFARYLDYSDGATGALMLNNAEWLDSLNYLDFLRDIGRHFSVNRMLSFESVKSRLDREQSLSFLEFNYMILQAYDF 185          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_LISW6 (Tyrosyl-tRNA synthetase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=tyrS PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.397e-33
Identity = 74/179 (41.34%), Postives = 109/179 (60.89%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF---GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D LE RG +   T +  LR      EK + +YCG DP+ +S+H+G+L+  ++L  F   GH+ + L+GGAT  +GDPSGK  ER    ++ + +N+  +      IF   G S   ++NNYDW KD S LDFL+  G+   + TM++K+ V  RL  E G+SFTEF+YQ+LQ  DF
Sbjct:    2 NIIDELEWRGAIYQQTDEEGLRKWVE--EKQISLYCGIDPSGDSMHIGHLIPFMILRRFQNAGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISRNVESLRVQLGKIFDFEGDSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLSKDIVASRL--EVGISFTEFAYQILQAMDF 176          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BUCAT (Tyrosyl-tRNA synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=tyrS PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.397e-33
Identity = 83/182 (45.60%), Postives = 115/182 (63.19%), Query Frame = 3
Query:  237 NVVDILERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERP-----ELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N +  L  RGL+  IT+ DNL  L  +  K++ +YCGFDPT ESLH+G+LL +I+L  F   GH+ + LIGGAT+ +GDPS K  ER       ++I T EK    IS       G ++ V+LNN  W+K  + L FL+ VG++  + TMI + +VK+R+   +QG+SFTEFSY LLQ YDF
Sbjct:    5 NFISRLHNRGLISHITNEDNLSKLIEN--KSISLYCGFDPTEESLHIGHLLPLIMLKRFQIAGHRPIILIGGATSLIGDPSFKEKERVFNSNYNVNIWT-EKITKQISCFLDFNCGKNSAVLLNNNTWFKQINILSFLRDVGKYFSVNTMINRAAVKQRITRPDQGISFTEFSYNLLQAYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BUCAI (Tyrosyl-tRNA synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=tyrS PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.397e-33
Identity = 83/182 (45.60%), Postives = 115/182 (63.19%), Query Frame = 3
Query:  237 NVVDILERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERP-----ELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N +  L  RGL+  IT+ DNL  L  +  K++ +YCGFDPT ESLH+G+LL +I+L  F   GH+ + LIGGAT+ +GDPS K  ER       ++I T EK    IS       G ++ V+LNN  W+K  + L FL+ VG++  + TMI + +VK+R+   +QG+SFTEFSY LLQ YDF
Sbjct:    5 NFISRLHNRGLISHITNEDNLSKLIEN--KSISLYCGFDPTEESLHIGHLLPLIMLKRFQIAGHRPIILIGGATSLIGDPSFKEKERVFNSNYNVNIWT-EKITKQISCFLDFNCGKNSAVLLNNNTWFKQINILSFLRDVGKYFSVNTMINRAAVKQRITRPDQGISFTEFSYNLLQAYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BUCA5 (Tyrosyl-tRNA synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=tyrS PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.397e-33
Identity = 83/182 (45.60%), Postives = 115/182 (63.19%), Query Frame = 3
Query:  237 NVVDILERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERP-----ELDIDTLEKNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL-ESEQGLSFTEFSYQLLQGYDF 761
            N +  L  RGL+  IT+ DNL  L  +  K++ +YCGFDPT ESLH+G+LL +I+L  F   GH+ + LIGGAT+ +GDPS K  ER       ++I T EK    IS       G ++ V+LNN  W+K  + L FL+ VG++  + TMI + +VK+R+   +QG+SFTEFSY LLQ YDF
Sbjct:    5 NFISRLHNRGLISHITNEDNLSKLIEN--KSISLYCGFDPTEESLHIGHLLPLIMLKRFQIAGHRPIILIGGATSLIGDPSFKEKERVFNSNYNVNIWT-EKITKQISCFLDFNCGKNSAVLLNNNTWFKQINILSFLRDVGKYFSVNTMINRAAVKQRITRPDQGISFTEFSYNLLQAYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ANASK (Tyrosyl-tRNA synthetase OS=Anaeromyxobacter sp. (strain K) GN=tyrS PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.397e-33
Identity = 74/178 (41.57%), Postives = 109/178 (61.24%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIS---KTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+++ L  R L+   T      LA      +  Y GFDPTA+SLH+G+LL ++ L+W  RCG   + ++GG T  VGDPSGK  ERP L ++ +++N+  I    + F +  G +   + NN DW +    ++FL+ VG+   +  M+AK+SVK R+ES  G+SFTEFSYQL+Q YDF
Sbjct:    3 NLLEALVSRSLVHDQTPGLQARLAQG---PITGYVGFDPTADSLHVGHLLAVMSLAWLQRCGGTPIIVVGGGTGMVGDPSGKRSERPVLSVEEIDRNVAAIRAQLERFVSFEGQNAARVRNNADWLRAIGLMEFLRDVGKHFTVNYMLAKDSVKGRMES--GISFTEFSYQLIQAYDF 175          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ANAD2 (Tyrosyl-tRNA synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=tyrS PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.397e-33
Identity = 74/178 (41.57%), Postives = 109/178 (61.24%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIS---KTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+++ L  R L+   T      LA      +  Y GFDPTA+SLH+G+LL ++ L+W  RCG   + ++GG T  VGDPSGK  ERP L ++ +++N+  I    + F +  G +   + NN DW +    ++FL+ VG+   +  M+AK+SVK R+ES  G+SFTEFSYQL+Q YDF
Sbjct:    3 NLLEALVSRSLVHDQTPGLQARLAQG---PITGYVGFDPTADSLHVGHLLAVMSLAWLQRCGGTPIIVVGGGTGMVGDPSGKRSERPVLSVEEIDRNVAAIRAQLERFVSFEGQNAARVRNNADWLRAIGLMEFLRDVGKHFTVNYMLAKDSVKGRMES--GISFTEFSYQLIQAYDF 175          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_LACRD1.070e-3341.48Tyrosyl-tRNA synthetase OS=Lactobacillus reuteri (... [more]
SYY_ANADE1.070e-3341.57Tyrosyl-tRNA synthetase OS=Anaeromyxobacter dehalo... [more]
SYY_SHIDS1.397e-3341.67Tyrosyl-tRNA synthetase OS=Shigella dysenteriae se... [more]
SYY_RHOS51.397e-3339.67Tyrosyl-tRNA synthetase OS=Rhodobacter sphaeroides... [more]
SYY_LISW61.397e-3341.34Tyrosyl-tRNA synthetase OS=Listeria welshimeri ser... [more]
SYY_BUCAT1.397e-3345.60Tyrosyl-tRNA synthetase OS=Buchnera aphidicola sub... [more]
SYY_BUCAI1.397e-3345.60Tyrosyl-tRNA synthetase OS=Buchnera aphidicola sub... [more]
SYY_BUCA51.397e-3345.60Tyrosyl-tRNA synthetase OS=Buchnera aphidicola sub... [more]
SYY_ANASK1.397e-3341.57Tyrosyl-tRNA synthetase OS=Anaeromyxobacter sp. (s... [more]
SYY_ANAD21.397e-3341.57Tyrosyl-tRNA synthetase OS=Anaeromyxobacter dehalo... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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