CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY2_ENTFA (Tyrosyl-tRNA synthetase 2 OS=Enterococcus faecalis GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.397e-33
Identity = 79/174 (45.40%), Postives = 113/174 (64.94%), Query Frame = 3
Query:  252 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE---KNILGISKTFSTIFGSSNVVIL-NNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            L+ RGL+  +T +        NE+++K+Y GFDPTA+SLH+G+LL I++L  F + GH  +AL+GG T  +GDPS K  ER    +DT++   ++I G    F       N  IL NNYDW  + S +DFL+ VG+   I  M++KESVK+R+E+  G+S+TEF+YQLLQ YDF
Sbjct:    9 LKARGLVYQVTDEEALQ-KQLNEESVKLYIGFDPTADSLHIGHLLPILMLRRFQQNGHVPIALVGGGTGMIGDPSFKDAERSLNTLDTVKAWSESIKGQLSRFIDFEDEKNPAILANNYDWLGELSLIDFLRDVGKNFTINYMMSKESVKRRIET--GISYTEFAYQLLQAYDF 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PARDP (Tyrosyl-tRNA synthetase OS=Paracoccus denitrificans (strain Pd 1222) GN=tyrS PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.825e-33
Identity = 72/184 (39.13%), Postives = 117/184 (63.59%), Query Frame = 3
Query:  219 THGRHPNVVDILERRGLLESITSDNLRSLASSN-EKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            T+    + ++++  RG L   T  ++++L  +  +  +  Y G+D TA SLH+G+LL I++L WF + G++ + L+GG T +VGDPS +S ERP L  D +++NI G+ + F+    +G    ++LNN +W    ++LDFL+ +GR   +  M++ ESVK RL+ EQ LSF EF+Y +LQ YDF
Sbjct:    2 TYRAKSDFLNVMIERGYLADCT--DMQALDDALIDGPVTAYIGYDATAASLHVGHLLNIMMLRWFQKTGNRPITLMGGGTTKVGDPSFRSEERPLLTPDKIDENIAGMKQVFARYLDYGDQGAMMLNNAEWLDSLNYLDFLRDIGRHFSVNRMLSFESVKSRLDREQSLSFLEFNYMILQAYDF 183          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_STRA3 (Tyrosyl-tRNA synthetase OS=Streptococcus agalactiae serotype III GN=tyrS PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.383e-33
Identity = 76/179 (42.46%), Postives = 114/179 (63.69%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTL---EKNILG-ISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N+ D L+ RGL+   T ++    A   E ++  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K +ER     +T+      I G +S       G +  V++NNYDW+ + SF+DFL+ VG++  +  M++KESVKKR+E+  G+S+TEF+YQ++QGYDF
Sbjct:    2 NIFDELKERGLVFQTTDEDALRKALE-EGSVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDVERSLQTKETVVSWGNKIRGQLSNFLEFETGDNKAVLVNNYDWFSNISFIDFLRDVGKYFTVNYMMSKESVKKRIET--GISYTEFAYQIMQGYDF 177          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_NEIMF (Tyrosyl-tRNA synthetase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=tyrS PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.383e-33
Identity = 75/180 (41.67%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSL-ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE---KNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            +V+  L+ RGL+   T  ++ +L A  NE+ + +YCGFDPTA+SLH+G+LL ++ L  F + GH  +AL+GGAT  +GDPS K+ ER     +T+    ++I      F +  G +  ++ NN DW+   + LDFL+ +G+   +  M+ KESVK+R++ +  G+SFTEF+Y LLQGYDF
Sbjct:    2 SVIQDLQSRGLIAQTT--DIEALDALLNEQKISLYCGFDPTADSLHIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVESIRSQLTPFLSFEGGNAAIMANNADWFGKMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRDGAGISFTEFAYSLLQGYDF 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_NEIMB (Tyrosyl-tRNA synthetase OS=Neisseria meningitidis serogroup B GN=tyrS PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.383e-33
Identity = 75/180 (41.67%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSL-ASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE---KNILGISKTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            +V+  L+ RGL+   T  ++ +L A  NE+ + +YCGFDPTA+SLH+G+LL ++ L  F + GH  +AL+GGAT  +GDPS K+ ER     +T+    ++I      F +  G +  ++ NN DW+   + LDFL+ +G+   +  M+ KESVK+R++ +  G+SFTEF+Y LLQGYDF
Sbjct:    2 SVIQDLQSRGLIAQTT--DIEALDALLNEQKIALYCGFDPTADSLHIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVESIRNQLTPFLSFEGGNAAIMANNADWFGSMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRDGAGISFTEFAYSLLQGYDF 179          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_ENTS8 (Tyrosyl-tRNA synthetase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=tyrS PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.383e-33
Identity = 74/180 (41.11%), Postives = 114/180 (63.33%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQ-GLSFTEFSYQLLQGYDF 761
            N++  L+ RGL+  +T +   +   + +  + +YCGFDPTA+SLHLG+L+ ++ L  F   GH+ VAL+GGAT  +GDPS K+ ER     DT+++ +  I +  +       G ++ +  NNYDW+ + + L FL+ +G+   +  MI KE+VK+RL  +  G+SFTEFSY LLQGYDF
Sbjct:    9 NLIKQLQERGLVAQVTDEEALAQRLA-QGPIALYCGFDPTADSLHLGHLVPLLCLKRFQMAGHKPVALVGGATGLIGDPSFKATERKLNTEDTVQEWVDKIRRQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDVGISFTEFSYNLLQGYDF 187          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CORDI (Tyrosyl-tRNA synthetase OS=Corynebacterium diphtheriae GN=tyrS PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.383e-33
Identity = 77/178 (43.26%), Postives = 113/178 (63.48%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISK---TFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            N++D L+ RGL+   T  ++ +L  + EK + +YCGFDPT +SLH G+L+ +I+L  F   GH+ + L GGAT  +GDP     ER  L  DT+E N+  I K   +F    G S  +++NN DW    S +DFL+ VG+   + TM+ +E+VK+RLE++ G+S+TEFSY LLQ  DF
Sbjct:    2 NIIDELQWRGLINQST--DIDALREACEKPITLYCGFDPTGDSLHAGHLVPMIMLRRFQEAGHRPITLAGGATGFIGDPRDVG-ERSMLSQDTIEHNLESIKKQLRSFVRFDGDSPAIMVNNADWTMSMSVVDFLRDVGKNFSLNTMLDRETVKRRLETD-GISYTEFSYMLLQANDF 175          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CHLTR (Tyrosyl-tRNA synthetase OS=Chlamydia trachomatis GN=tyrS PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.383e-33
Identity = 80/176 (45.45%), Postives = 112/176 (63.64%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGS--SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++D L++RG+L++ +S  L SL       +  Y GFDPTA SLH+G+ +GI  L      G   VAL+GGAT  +GDPSGKS+ER  LD    +  +L  SK  +    S    + I+NN DW    S +DFL+ VG+  R+G+M+AK+ VK+R+ SE+G+S+TEFSY LLQ YDF
Sbjct:    4 LIDNLKKRGILDN-SSAGLESLTVP----VSAYLGFDPTAPSLHIGHWIGICFLRRLAAYGITPVALVGGATGMIGDPSGKSVERSLLD----QAQVLDNSKKIAAALASYLPGIRIVNNADWLGSLSMVDFLRDVGKHFRLGSMLAKDVVKQRVYSEEGISYTEFSYLLLQSYDF 170          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CHLTB (Tyrosyl-tRNA synthetase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=tyrS PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.383e-33
Identity = 80/176 (45.45%), Postives = 112/176 (63.64%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGS--SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++D L++RG+L++ +S  L SL       +  Y GFDPTA SLH+G+ +GI  L      G   VAL+GGAT  +GDPSGKS+ER  LD    +  +L  SK  +    S    + I+NN DW    S +DFL+ VG+  R+G+M+AK+ VK+R+ SE+G+S+TEFSY LLQ YDF
Sbjct:    4 LIDNLKKRGILDN-SSAGLESLTVP----VSAYLGFDPTAPSLHIGHWIGICFLRRLAAYGITPVALVGGATGMIGDPSGKSVERSLLD----QAQVLDNSKKIAAALASYLPGIRIVNNADWLGSLSMVDFLRDVGKHFRLGSMLAKDVVKQRVYSEEGISYTEFSYLLLQSYDF 170          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_CHLTA (Tyrosyl-tRNA synthetase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=tyrS PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.383e-33
Identity = 80/176 (45.45%), Postives = 112/176 (63.64%), Query Frame = 3
Query:  240 VVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGS--SNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++D L++RG+L++ +S  L SL       +  Y GFDPTA SLH+G+ +GI  L      G   VAL+GGAT  +GDPSGKS+ER  LD    +  +L  SK  +    S    + I+NN DW    S +DFL+ VG+  R+G+M+AK+ VK+R+ SE+G+S+TEFSY LLQ YDF
Sbjct:    4 LIDNLKKRGILDN-SSAGLESLTVP----VSAYLGFDPTAPSLHIGHWIGICFLRRLAAYGITPVALVGGATGMIGDPSGKSVERSLLD----QAQVLDNSKKIAAALASYLPGIRIVNNADWLGSLSMVDFLRDVGKHFRLGSMLAKDVVKQRVYSEEGISYTEFSYLLLQSYDF 170          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY2_ENTFA1.397e-3345.40Tyrosyl-tRNA synthetase 2 OS=Enterococcus faecalis... [more]
SYY_PARDP1.825e-3339.13Tyrosyl-tRNA synthetase OS=Paracoccus denitrifican... [more]
SYY_STRA32.383e-3342.46Tyrosyl-tRNA synthetase OS=Streptococcus agalactia... [more]
SYY_NEIMF2.383e-3341.67Tyrosyl-tRNA synthetase OS=Neisseria meningitidis ... [more]
SYY_NEIMB2.383e-3341.67Tyrosyl-tRNA synthetase OS=Neisseria meningitidis ... [more]
SYY_ENTS82.383e-3341.11Tyrosyl-tRNA synthetase OS=Enterobacter sakazakii ... [more]
SYY_CORDI2.383e-3343.26Tyrosyl-tRNA synthetase OS=Corynebacterium diphthe... [more]
SYY_CHLTR2.383e-3345.45Tyrosyl-tRNA synthetase OS=Chlamydia trachomatis G... [more]
SYY_CHLTB2.383e-3345.45Tyrosyl-tRNA synthetase OS=Chlamydia trachomatis (... [more]
SYY_CHLTA2.383e-3345.45Tyrosyl-tRNA synthetase OS=Chlamydia trachomatis (... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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