CX292078

Overview
NameCX292078
Unique NameCX292078
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length486
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292078 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.971e-11
Identity = 40/109 (36.70%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    7 RRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV-EFEKIHAEVKDGVLYITIPKASSTAK 330
            R  R  W +RE E   ++++D+PG+++ DVKV VE++ L+IK+E  +  E        EEE+         YS+RI L  N+ + + I AE+K+GVL +T+PK     K
Sbjct:  101 RAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETE--------EEEQR------RRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEK 195          
BLAST of CX292078 vs. ExPASy Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.971e-11
Identity = 38/112 (33.93%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   25 WAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV-EFEKIHAEVKDGVLYITIPKASSTAK--IVDINVQ 351
            W  RETE+   +R+D+PG+++ DVK+ VE++ L+IK E A+  +        EEE          Y++RI LPD + + ++I AE+K+GVL + +PK     +  ++ + V+
Sbjct:  114 WDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEGAKEGD--------EEESA------RRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDVISVKVE 211          
BLAST of CX292078 vs. ExPASy Swiss-Prot
Match: HS23M_ORYSJ (23.6 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   31 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIHAEVKDGVLYITIPKASSTAKIV 336
            +RE E  Y++R +VPG+ ++DV+V V++ +L I  EK  R+    D     + E W +    +Y   + LP++   E I AEV+DGVL++T+P++    + V
Sbjct:  117 VREDEERYRLRFEVPGLGKDDVRVYVDDGVLAIHGEK--RDVVEEDRGRDGDGECWAA---ATYHAGLLLPEDAVAEGITAEVRDGVLHVTVPRSPERKRSV 213          
The following BLAST results are available for this feature:
BLAST of CX292078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HS23C_CHERU2.971e-1136.70Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS22M_SOYBN2.971e-1133.93Heat shock 22 kDa protein, mitochondrial OS=Glycin... [more]
HS23M_ORYSJ6.619e-1134.3123.6 kDa heat shock protein, mitochondrial OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC04010C03SK FlavFr1 Citrus clementina cDNA clone C04010C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292078 ID=CX292078; Name=CX292078; organism=Citrus clementina; type=EST; length=486bp
GGCACGAGGCGGGGAAGAACGCCTTGGGCCATCAGGGAAACGGAAAACGA
CTACAAGATTAGGTTAGACGTGCCTGGCATGAGCAGGAATGATGTTAAGG
TACGGGTTGAAGAGAGCATGCTCGTAATCAAGGCAGAAAAGGCTCAAAGG
AACGAAGCAAACACTGATGGAAGTACAGTTGAGGAAGAAGAAGAGTGGCC
AAGCAATGGTTACGGAAGCTACAGCACTAGAATTGCATTGCCTGACAACG
TAGAGTTTGAGAAGATTCATGCAGAGGTGAAAGATGGCGTACTGTATATA
ACCATTCCAAAGGCCAGCTCCACCGCCAAAATCGTCGACATTAATGTCCA
ATAGGACAAGTATTCTGGTAACCTCAAGTTCCACATAGGACAAACCTAGA
TCTGCCCTGAGGAAGGTGGTGGGTAGAAAATAAGTGGCAGTAGGGTTAAT
TTGATTTCTTCATGTAATTTCAAACAGGAAGGTTAG
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