CX292078

Overview
NameCX292078
Unique NameCX292078
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length486
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292078 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.591e-23
Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   16 RTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIHAEVKDGVLYITIPKASSTAKIVDINVQ 351
            R PW I++ E++ ++R D+PG+++ DVKV VE+ MLVIK       E   D S       W S  Y SY TR+ LPDN E +K+ AE+K+GVLYITIPK     K++D+ VQ
Sbjct:   77 RAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDS-------WSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQVQ 181          
BLAST of CX292078 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.772e-23
Identity = 53/116 (45.69%), Postives = 74/116 (63.79%), Query Frame = 1
Query:    1 GTRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIHAEVKDGVLYITIPKASSTAKIVDINV 348
            GT   RTPW I + EN+ K+R D+PG+S+ DVKV VE  MLVIK E  +  +         ++  W  N Y SY TR++LPDNV  +KI AE+K+GVL+I+IPK     K++D+ +
Sbjct:  127 GTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDG-------RDKHSWGRN-YSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of CX292078 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.845e-23
Identity = 49/117 (41.88%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    1 GTRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIHAEVKDGVLYITIPKASSTAKIVDINVQ 351
            G    R PW I+E E++ K+R D+PG+S+ DVK+ VE+++LVIK E+ +           + ++ W      SY TR+ LPDN E +KI AE+K+GVL+ITIPK     K++D+ +Q
Sbjct:  121 GVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKE----------DSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQIQ 227          
BLAST of CX292078 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.286e-22
Identity = 49/112 (43.75%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   16 RTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIHAEVKDGVLYITIPKASSTAKIVDINVQ 351
            R PW I++ E++ ++R D+PG+S+ DVKV VE+ +LVIK++  + N           E+ W    Y  Y TR+ LPDN E EK+ AE+KDGVLYITIPK      ++D+ +Q
Sbjct:  130 RVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGG---------EDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQIQ 232          
BLAST of CX292078 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.422e-21
Identity = 52/117 (44.44%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 GTRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIHAEVKDGVLYITIPKASSTAKIVDINVQ 351
            GT   R PW I++ EN+ K+R D+PG+S+ +VKV VE+ +LVIK E  ++ E+  D S       W  N Y SY TR++LPDNV+ +K+ AE+K+GVL I+IPK     K+ D+ ++
Sbjct:  134 GTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEH-KKEESGKDDS-------WGRN-YSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEIK 241          
BLAST of CX292078 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.604e-19
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   16 RTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIHAEVKDGVLYITIPKASSTAKIVDINVQ 351
            R PW + E + + ++R D+PG+SR +VKV VE+  LVI+ E  +      +GS    +  W      SY  R+ALPD  +  K+ AE+K+GVL +T+PK     K++D+ VQ
Sbjct:  132 RMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSG---DGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQVQ 240          
BLAST of CX292078 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.126e-18
Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   10 RGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAE-KAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIHAEVKDGVLYITIPKASSTAKIVDINVQ 351
            R R PW I E E + K+R D+PG+SR +V+V VE+  LVI+ E K +  E   +G     +  W      SY  R+ALPD  +  ++ AE+K+GVL +++PK  +  K++D+ VQ
Sbjct:  128 RRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGG----DGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQVQ 238          
BLAST of CX292078 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.068e-16
Identity = 40/108 (37.04%), Postives = 71/108 (65.74%), Query Frame = 1
Query:   31 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIHAEVKDGVLYITIPKASSTAK-IVDINVQ 351
            ++E ++ YK+R +VPG+++ DVK+ V + +L IK +    ++A  +  + EE+E W S  YG Y+T ++LPD+ + E I AE+K+GVL + IP+     K + +I+V+
Sbjct:  129 VKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGD----HKAEEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTEKPKKNVQEISVE 232          
BLAST of CX292078 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    1 GTRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV-EFEKIHAEVKDGVLYITIPK 312
            G RRG   W I+E ++   +R+D+PG+SR DVK+ +E+  LVI+ E          G   E+  E   +G   +++RI LPD + + ++I AE+K+GVL + IPK
Sbjct:  104 GARRG---WDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGE----------GKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPK 195          
BLAST of CX292078 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 45/119 (37.82%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    4 TRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV-EFEKIHAEVKDGVLYITIPKASSTAKIVDINVQ*D 357
            +RRG   W  RETE+   +RLD+PG+ + DVK+ VE++ L IK E+             +E EE   +G   +S+RI LP+ + + + I AE+K+GVL +T+PK     +   INV+ D
Sbjct:   99 SRRG---WDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEG-----------AKESEEKEKSG-RRFSSRIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKVD 202          
The following BLAST results are available for this feature:
BLAST of CX292078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HS22C_SOYBN2.591e-2346.43Small heat shock protein, chloroplastic (Fragment)... [more]
HS21C_SOLLC5.772e-2345.69Small heat shock protein, chloroplastic OS=Solanum... [more]
HS25P_ARATH9.845e-2341.8825.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_PEA1.286e-2243.75Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS22C_PETHY1.422e-2144.44Small heat shock protein, chloroplastic OS=Petunia... [more]
HS26P_ORYSJ6.604e-1938.3926.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS21C_WHEAT1.126e-1839.13Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26M_ARATH3.068e-1637.0426.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23M_ARATH5.987e-1238.1023.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA7.819e-1237.82Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]

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Properties
Property NameValue
Genbank descriptionC04010C03SK FlavFr1 Citrus clementina cDNA clone C04010C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292078 ID=CX292078; Name=CX292078; organism=Citrus clementina; type=EST; length=486bp
GGCACGAGGCGGGGAAGAACGCCTTGGGCCATCAGGGAAACGGAAAACGA
CTACAAGATTAGGTTAGACGTGCCTGGCATGAGCAGGAATGATGTTAAGG
TACGGGTTGAAGAGAGCATGCTCGTAATCAAGGCAGAAAAGGCTCAAAGG
AACGAAGCAAACACTGATGGAAGTACAGTTGAGGAAGAAGAAGAGTGGCC
AAGCAATGGTTACGGAAGCTACAGCACTAGAATTGCATTGCCTGACAACG
TAGAGTTTGAGAAGATTCATGCAGAGGTGAAAGATGGCGTACTGTATATA
ACCATTCCAAAGGCCAGCTCCACCGCCAAAATCGTCGACATTAATGTCCA
ATAGGACAAGTATTCTGGTAACCTCAAGTTCCACATAGGACAAACCTAGA
TCTGCCCTGAGGAAGGTGGTGGGTAGAAAATAAGTGGCAGTAGGGTTAAT
TTGATTTCTTCATGTAATTTCAAACAGGAAGGTTAG
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