CX293825

Overview
NameCX293825
Unique NameCX293825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9860 contig Ccv1_Contig9860:9..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: EIF1_HUMAN (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.982e-24
Identity = 47/77 (61.04%), Postives = 64/77 (83.12%), Query Frame = 3
Query:  216 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIG 101          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: EIF1_BOVIN (Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.982e-24
Identity = 47/77 (61.04%), Postives = 64/77 (83.12%), Query Frame = 3
Query:  216 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIG 101          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: EIF1_MOUSE (Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 9.119e-24
Identity = 46/77 (59.74%), Postives = 64/77 (83.12%), Query Frame = 3
Query:  216 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ G
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIG 101          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.191e-23
Identity = 46/77 (59.74%), Postives = 64/77 (83.12%), Query Frame = 3
Query:  216 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ G
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVG 101          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: EIF1B_MOUSE (Eukaryotic translation initiation factor 1b OS=Mus musculus GN=Eif1b PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.191e-23
Identity = 46/77 (59.74%), Postives = 64/77 (83.12%), Query Frame = 3
Query:  216 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ G
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVG 101          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: EIF1B_MACFA (Eukaryotic translation initiation factor 1b OS=Macaca fascicularis GN=EIF1B PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.191e-23
Identity = 46/77 (59.74%), Postives = 64/77 (83.12%), Query Frame = 3
Query:  216 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ G
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVG 101          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: EIF1B_HUMAN (Eukaryotic translation initiation factor 1b OS=Homo sapiens GN=EIF1B PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.191e-23
Identity = 46/77 (59.74%), Postives = 64/77 (83.12%), Query Frame = 3
Query:  216 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ G
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVG 101          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.831e-22
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 3
Query:  207 DSXAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLV 437
            D    +  Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK LKK+F CNG +V+DPE+G++IQLQGDQR  V  F++
Sbjct:   17 DDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMI 93          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: SUI1_ASHGO (Protein translation factor SUI1 OS=Ashbya gossypii GN=SUI1A PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.902e-21
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 3
Query:  207 DSXAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLV 437
            D  A S  Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK L+K+F CNG +V+D E+G++IQLQGDQR  V  FL+
Sbjct:   17 DDEASSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCNGNMVKDDEMGEIIQLQGDQRAKVCEFLI 93          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.483e-21
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 3
Query:  207 DSXAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 440
            D  A     +HIR+QQRNGRK+LTTVQGL +EF   +IL+ LKK+F CNGT+V+D +LG+VIQLQGDQR  V  FL Q
Sbjct:   18 DDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQ 95          
The following BLAST results are available for this feature:
BLAST of CX293825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
EIF1_HUMAN6.982e-2461.04Eukaryotic translation initiation factor 1 OS=Homo... [more]
EIF1_BOVIN6.982e-2461.04Eukaryotic translation initiation factor 1 OS=Bos ... [more]
EIF1_MOUSE9.119e-2459.74Eukaryotic translation initiation factor 1 OS=Mus ... [more]
EIF1B_PIG1.191e-2359.74Eukaryotic translation initiation factor 1b OS=Sus... [more]
EIF1B_MOUSE1.191e-2359.74Eukaryotic translation initiation factor 1b OS=Mus... [more]
EIF1B_MACFA1.191e-2359.74Eukaryotic translation initiation factor 1b OS=Mac... [more]
EIF1B_HUMAN1.191e-2359.74Eukaryotic translation initiation factor 1b OS=Hom... [more]
SUI1_YEAST3.831e-2257.14Eukaryotic translation initiation factor eIF-1 OS=... [more]
SUI1_ASHGO1.902e-2158.44Protein translation factor SUI1 OS=Ashbya gossypii... [more]
SUI1_SCHPO2.483e-2161.54Protein translation factor sui1 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionC05001B05SK FlavSen1 Citrus clementina cDNA clone C05001B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293825 ID=CX293825; Name=CX293825; organism=Citrus clementina; type=EST; length=447bp
AGAACGAGCTTCAGACTTATACGAATCCGATTTAGGGTTTCTTTTTGATC
TTATCAGATCGGACTATCTCGATTATTAAACCCTAATCTTCGGATCAGGT
CTGAGCATTCCGGTTGTTGGGCCCCTTGCATCANCTGAGGTTCATGTCTG
ATTTTGATATCCAGGTTCCTGCTGCCTTTGACCCGTTTGCTGATGCAAAG
GCTGAGGACTCANGTGCTGGTTCAAAAGAGTATGTGCATATCCGTGTTCA
GCAACGGAATGGTAGGAAAAGCCTGACAACTGTCCAGGGGTTGAAGAAAG
AATTTAGTTACAACAAAATCCTCAAGGACCTCAAAAAGGAATTTTGCTGC
AATGGAACAGTGGTCCAGGATCCTGAACTAGGACAGGTCATTCAACTCCA
AGGTGACCAGCGGAAGAATGTATCTACGTTCCTTGTTCAGGCTGGGA
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