CX293825

Overview
NameCX293825
Unique NameCX293825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9860 contig Ccv1_Contig9860:9..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.236e-21
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 3
Query:  234 VHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CNGTV++ PE G+V+QLQGDQR+N+  +L + G
Sbjct:   28 VHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVG 98          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: SUI1_ANOGA (Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.533e-21
Identity = 44/71 (61.97%), Postives = 58/71 (81.69%), Query Frame = 3
Query:  234 VHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CNGTV++ PE G+V+QLQGDQR+N+  +L ++G
Sbjct:   28 VHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKSG 98          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: EIF1_CHICK (Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus gallus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.965e-19
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 3
Query:  246 VQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            +QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G
Sbjct:    1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIG 67          
The following BLAST results are available for this feature:
BLAST of CX293825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_DROME4.236e-2161.97Protein translation factor SUI1 homolog OS=Drosoph... [more]
SUI1_ANOGA5.533e-2161.97Protein translation factor SUI1 homolog OS=Anophel... [more]
EIF1_CHICK3.965e-1961.19Eukaryotic translation initiation factor 1 (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionC05001B05SK FlavSen1 Citrus clementina cDNA clone C05001B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293825 ID=CX293825; Name=CX293825; organism=Citrus clementina; type=EST; length=447bp
AGAACGAGCTTCAGACTTATACGAATCCGATTTAGGGTTTCTTTTTGATC
TTATCAGATCGGACTATCTCGATTATTAAACCCTAATCTTCGGATCAGGT
CTGAGCATTCCGGTTGTTGGGCCCCTTGCATCANCTGAGGTTCATGTCTG
ATTTTGATATCCAGGTTCCTGCTGCCTTTGACCCGTTTGCTGATGCAAAG
GCTGAGGACTCANGTGCTGGTTCAAAAGAGTATGTGCATATCCGTGTTCA
GCAACGGAATGGTAGGAAAAGCCTGACAACTGTCCAGGGGTTGAAGAAAG
AATTTAGTTACAACAAAATCCTCAAGGACCTCAAAAAGGAATTTTGCTGC
AATGGAACAGTGGTCCAGGATCCTGAACTAGGACAGGTCATTCAACTCCA
AGGTGACCAGCGGAAGAATGTATCTACGTTCCTTGTTCAGGCTGGGA
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