CX294126

Overview
NameCX294126
Unique NameCX294126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_PHYAS (Asparaginyl-tRNA synthetase OS=Phytoplasma australiense GN=asnS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.721e-12
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKE 285
            YPI   K +  FLR     R RT    AV RIR+   +A H F  K+GF +I+TPIIT +D EGAGE+FQ+T+L  + ++L +E
Sbjct:  104 YPIQPKKHSKSFLRTIPHLRTRTKLFGAVFRIRSTAFFALHHFFHKKGFFHINTPIITPNDGEGAGELFQLTSL--NLERLSQE 185          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_BUCBP (Asparaginyl-tRNA synthetase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=asnS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.457e-11
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 1
Query:   10 VGMVD-PAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            +G+++ P  YPI     T++ LR+    R RTN   AV+R+RN L  A H FL K G+ +I +PIIT  + EGAG+MF+V+ L
Sbjct:  100 IGIINNPGSYPISSKYHTMKHLRNVPHLRSRTNFFGAVSRVRNYLFNALHEFLFKNGYYWIPSPIITGLNSEGAGDMFKVSIL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_MYCGA (Asparaginyl-tRNA synthetase OS=Mycoplasma gallisepticum GN=asnS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 246
            DP+ YP+ K     EFLR+    R RTN    + +IR+ LA A   F +   FLY+H P+IT++D EGAGE F+V
Sbjct:  105 DPS-YPLQKKAHGSEFLRENAHLRVRTNKFYVIMKIRSELANAFFEFFKNNDFLYVHAPLITSNDSEGAGESFEV 178          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_MYCPE (Asparaginyl-tRNA synthetase OS=Mycoplasma penetrans GN=asnS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.232e-11
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 246
            YP+ K +   EFLR     R RTN    + R+R+ LA+A H F  +  F+++ +PIIT++D EGAGE F V
Sbjct:  105 YPLQKKEHGAEFLRTIAHLRQRTNKYGTIMRLRSELAFAIHNFFHQNNFVWVSSPIITSNDAEGAGENFYV 175          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_MYCPN (Asparaginyl-tRNA synthetase OS=Mycoplasma pneumoniae GN=asnS PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 29/73 (39.73%), Postives = 47/73 (64.38%), Query Frame = 1
Query:   28 AKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 246
            A YP+ K + +LEF R+    R R  T  A+ ++R+ L+ A   +  K  F+ +H+PI+T++DCEGAGE F++
Sbjct:  105 ADYPLQKKEHSLEFFRNNAYLRVRARTYFAIMKVRSLLSQAIFDYFFKNDFVLVHSPILTSNDCEGAGETFEL 177          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_MYCA5 (Asparaginyl-tRNA synthetase OS=Mycoplasma arthritidis (strain 158L3-1) GN=asnS PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 39/88 (44.32%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   10 VGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADK 273
            +G VD   +PI K + +L+FLR+    R RTN   A+  IR  LAY  H F  K  F+ I  PIIT++D EGAGE    T L+ D  K
Sbjct:   99 IGKVDN-NFPIQKKETSLDFLREIPHLRHRTNLFRAIMIIRATLAYEIHQFFNKNDFINISVPIITSNDGEGAGE----TLLVDDESK 181          
The following BLAST results are available for this feature:
BLAST of CX294126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYN_PHYAS1.721e-1246.43Asparaginyl-tRNA synthetase OS=Phytoplasma austral... [more]
SYN_BUCBP1.457e-1144.58Asparaginyl-tRNA synthetase OS=Buchnera aphidicola... [more]
SYN_MYCGA4.240e-1145.33Asparaginyl-tRNA synthetase OS=Mycoplasma gallisep... [more]
SYN_MYCPE7.232e-1143.66Asparaginyl-tRNA synthetase OS=Mycoplasma penetran... [more]
SYN_MYCPN9.445e-1139.73Asparaginyl-tRNA synthetase OS=Mycoplasma pneumoni... [more]
SYN_MYCA59.445e-1144.32Asparaginyl-tRNA synthetase OS=Mycoplasma arthriti... [more]

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Properties
Property NameValue
Genbank descriptionC05011D07SK AbsAOv1 Citrus clementina cDNA clone C05011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294126 ID=CX294126; Name=CX294126; organism=Citrus clementina; type=EST; length=502bp
GTGCTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTCTACATTCACACTCCAAT
TATCACCACCAGTGATTGTGAGGGTGCTGGTGAGATGTTTCAAGTTACAA
CTCTAATAAGTGATGCTGACAAGTTGGAGAAGGAACTGATCAAGAATCCT
CCTCCATCAGAAGCTGACATAGAAGCCGCCAAGCTTGTTGTCAAGGAGAA
AGGAGAGGCTGTTGCAAAACTAAAATCTGATAAAGCAGGCAAGGAGGCGA
TAAGTGCTAGTGTTACTGAACTTACAAAAGCGAAAGAGAATCTTGCAAGG
CTCGAGGAAAGATCAAAGCTTAAGCCAGGAATCCCACAAAAGATGGAAGA
TT
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