CX294126
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYNC3_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 3 OS=Arabidopsis thaliana GN=SYNC3 PE=2 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 4.181e-59 Identity = 111/163 (68.10%), Postives = 138/163 (84.66%), Query Frame = 1 Query: 1 VLDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVVKEKGEAVAKLKSDKAGKEAISASVTELTKAKENLARLEERSKLKPGIPQ 489 V+ VG VDP YP+PKTKLT EFLRD + R RTN I+AVARIRNALA+ATH+F Q+ FLYIHTPIITTSDCEGAGEMFQVTTLI+ +++E++LI NPPP+EAD+EAA+L+VKE+GEAVA+LK KA KE I+ASV +L+ AK +LA +EER +LKPG+P+ Sbjct: 128 VIAVGTVDPTTYPLPKTKLTPEFLRDVLHLRSRTNLISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINHTERVEQDLIDNPPPTEADVEAARLIVKERGEAVAQLKVAKASKEEITASVAQLSVAKASLAHVEERLRLKPGLPK 290
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYNC1_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 1 OS=Arabidopsis thaliana GN=SYNC1 PE=2 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 4.181e-59 Identity = 110/164 (67.07%), Postives = 139/164 (84.76%), Query Frame = 1 Query: 1 VLDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVVKEKGEAVAKLKSDKAGKEAISASVTELTKAKENLARLEERSKLKPGIPQK 492 V+DVG VD +KYP+PKTKLTLE LRD + R RTN+I+AVARIRNALA+ATH+F Q+ FLYIHTPIITTSDCEGAGEMFQ TTLI+ ++LE++LI NPPP+EAD+EAA+L+V E+G VA+LK+ KA KEAI+A+V EL AKE A ++ERS+L+PG+P+K Sbjct: 131 VIDVGTVDASKYPLPKTKLTLETLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQATTLINYTERLEQDLIDNPPPTEADVEAARLIVIERGNVVAELKAAKASKEAITAAVAELKIAKETFAHIDERSRLRPGLPKK 294
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYNC2_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 2 OS=Arabidopsis thaliana GN=SYNC2 PE=2 SV=2) HSP 1 Score: 130.568 bits (327), Expect = 4.078e-30 Identity = 73/172 (42.44%), Postives = 103/172 (59.88%), Query Frame = 1 Query: 1 VLDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEAD---IEAAKLVVKEKGEAVAKLKSDKAGKEAISASVTELTKAKENLARLEERSKLKPGI---PQKME 498 +L VG VDP KYP+ K +L L LRD FRPRT T+ +V R+ +AL A+HTFLQ GF Y+ P+ITT+ G GEMF+VTTL+ D E+ K PP E D I+ K V+KEK + LK + +E + A+V +L K + +++E + K K G P+K++ Sbjct: 201 LLHVGTVDPEKYPLSKKQLPLHMLRDFSHFRPRTTTVGSVTRVHSALTLASHTFLQYHGFQYVQVPVITTT--TGFGEMFRVTTLLGKTDDKEE---KKPPVQEKDGFSIDTVKAVIKEKTRLIDHLKRSDSNRETVVAAVHDLKKTNDLASQIEMKQKSKTGTLVKPEKLD 367
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_PARUW (Asparaginyl-tRNA synthetase OS=Protochlamydia amoebophila (strain UWE25) GN=asnS PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.039e-25 Identity = 56/82 (68.29%), Postives = 63/82 (76.83%), Query Frame = 1 Query: 10 VGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255 +G DP Y + K + T EFLR RPRTNTI AV R+RNALA+ATH F QK+GFLYIHTPIIT SDCEGAG+MFQVTTL Sbjct: 102 IGKCDPEVYLLQKKRHTFEFLRSIAHLRPRTNTIGAVTRVRNALAFATHQFFQKRGFLYIHTPIITGSDCEGAGKMFQVTTL 183
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SYNFM (Asparaginyl-tRNA synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=asnS PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24 Identity = 53/81 (65.43%), Postives = 61/81 (75.31%), Query Frame = 1 Query: 13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255 G DPA YP+ K + + EFLR RPRTNTI AV+R+RN L+YA H F Q +GF YIHTPIIT SDCEGAGEMF+VTTL Sbjct: 103 GTADPAVYPLQKKRHSFEFLRQIGHLRPRTNTIGAVSRVRNRLSYAIHQFFQDRGFYYIHTPIITASDCEGAGEMFRVTTL 183
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_TREDE (Asparaginyl-tRNA synthetase OS=Treponema denticola GN=asnS PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.271e-23 Identity = 54/94 (57.45%), Postives = 67/94 (71.28%), Query Frame = 1 Query: 13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIK 294 G D KYP+ K + ++EFLRD R RTNT AVARIR+ +AYA HTF Q++GF Y+HTPIIT SDCEGAGEMF VTT D ++ K+ +K Sbjct: 101 GDADQEKYPLQKKRHSMEFLRDIAHLRARTNTFGAVARIRSQMAYAIHTFFQERGFQYVHTPIITGSDCEGAGEMFHVTTF--DIEETVKKALK 192
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_DESPS (Asparaginyl-tRNA synthetase OS=Desulfotalea psychrophila GN=asnS PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.660e-23 Identity = 51/85 (60.00%), Postives = 62/85 (72.94%), Query Frame = 1 Query: 10 VGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISD 264 VG DP YP+ K + +LEFLR+ RPRTN I+AVAR+R+ L+YA H F Q++GF +HTPIITTSDCEGAGEMFQV D Sbjct: 97 VGWADPETYPLQKKRHSLEFLREISHLRPRTNAISAVARVRSRLSYAVHNFFQEKGFTQVHTPIITTSDCEGAGEMFQVAATGKD 181
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_THEEB (Asparaginyl-tRNA synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=asnS PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.835e-22 Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 1 Query: 13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255 G DP YP+ K + + EFLR RPRTNT+ AV R+RNA A A H F Q++GFL++HTPIIT SDCEGAGE+F VTTL Sbjct: 98 GTADPETYPLQKKRHSFEFLRTIAHLRPRTNTLGAVMRVRNACATAIHQFFQERGFLWVHTPIITASDCEGAGELFTVTTL 178
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SYNY3 (Asparaginyl-tRNA synthetase OS=Synechocystis sp. (strain PCC 6803) GN=asnS PE=3 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 2.396e-22 Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 1 Query: 10 VGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255 +G DP YP+ K + + EFLR RPRTNTI AV R+RNA A A H F Q++GFL++HTPIIT SDCEGAG++F+VTTL Sbjct: 98 LGGADPGSYPLQKKRHSFEFLRTIGHLRPRTNTIGAVMRVRNACATAIHQFFQERGFLWVHTPIITASDCEGAGDLFKVTTL 179
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_PORGI (Asparaginyl-tRNA synthetase OS=Porphyromonas gingivalis GN=asnS PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 3.130e-22 Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 1 Query: 13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDA 267 G DPA YP+ K TLEFLR+ RPRTNT A+ RIR+ +A A HTF +G+ Y H P+IT SDCEGAG+MFQVTTL D+ Sbjct: 102 GTADPATYPLQKKGHTLEFLREIAHLRPRTNTFGAIYRIRHHMAIAIHTFFHNKGYYYFHAPLITASDCEGAGQMFQVTTLNPDS 186 The following BLAST results are available for this feature:
BLAST of CX294126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294126 ID=CX294126; Name=CX294126; organism=Citrus clementina; type=EST; length=502bpback to top |