CX294126

Overview
NameCX294126
Unique NameCX294126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_CLONN (Asparaginyl-tRNA synthetase OS=Clostridium novyi (strain NT) GN=asnS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.709e-21
Identity = 50/95 (52.63%), Postives = 62/95 (65.26%), Query Frame = 1
Query:   28 AKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSE 312
            A YP+ K + T E+LR     RPR+N  +AV R+R+  AYA H F Q QGF+Y+HTPIIT SDCEGAGEMF+VTTL           ++NPP  E
Sbjct:  104 ADYPLQKKRHTFEYLRSIAHLRPRSNAFSAVFRVRSLAAYAIHKFFQDQGFVYVHTPIITGSDCEGAGEMFRVTTLD----------MENPPKDE 188          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SOLUE (Asparaginyl-tRNA synthetase OS=Solibacter usitatus (strain Ellin6076) GN=asnS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.007e-20
Identity = 48/81 (59.26%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            G  DP  YP+ K K TLE LR+    R R+NT  AV R+RNALA A H F Q +GF+Y+HTP+I+ SD EGAG MFQVTTL
Sbjct:   99 GTADPEHYPLQKKKHTLETLRELGHLRTRSNTFGAVFRVRNALACAIHKFFQDRGFMYVHTPVISASDAEGAGSMFQVTTL 179          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_CLOBB (Asparaginyl-tRNA synthetase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=asnS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.315e-20
Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKE 285
            YP+ K + T E+LR     RPR+N  +A  R+R+  A+A H F Q+QGF+Y HTPIIT SDCEGAGEMF+VTTL   A +L KE
Sbjct:  107 YPLQKKRHTFEYLRSIAHLRPRSNAFSATFRVRSVAAFAIHKFFQEQGFVYTHTPIITGSDCEGAGEMFRVTTLDPKAPELTKE 190          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_CLOBA (Asparaginyl-tRNA synthetase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=asnS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.315e-20
Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKE 285
            YP+ K + T E+LR     RPR+N  +A  R+R+  A+A H F Q+QGF+Y HTPIIT SDCEGAGEMF+VTTL   A +L KE
Sbjct:  107 YPLQKKRHTFEYLRSIAHLRPRSNAFSATFRVRSVAAFAIHKFFQEQGFVYTHTPIITGSDCEGAGEMFRVTTLDPKAPELTKE 190          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_DESHY (Asparaginyl-tRNA synthetase OS=Desulfitobacterium hafniense (strain Y51) GN=asnS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.717e-20
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDA 267
            YP+ K + + E+LR     RPRTNT AAV R+R+ +AYA H F Q +GF+YIHTPIIT SD EGAGEMF+VTTL  DA
Sbjct:  106 YPLQKKRHSFEYLRTIAHLRPRTNTFAAVFRVRSLVAYAIHKFFQDKGFVYIHTPIITGSDAEGAGEMFRVTTLDLDA 183          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_PHOPR (Asparaginyl-tRNA synthetase OS=Photobacterium profundum GN=asnS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.243e-20
Identity = 47/83 (56.63%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   10 VGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG+V DP  YP+ KT+ ++E+LR+    RPRTN I AVAR+RN L+ A H F  +QGF ++  P+IT SDCEGAGEMF+V+TL
Sbjct:  100 VGLVEDPDTYPMAKTRHSIEYLREVAHLRPRTNIIGAVARVRNCLSQAIHRFYHEQGFFWMSAPLITASDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_CLOTE (Asparaginyl-tRNA synthetase OS=Clostridium tetani GN=asnS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.929e-20
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            YP+ K + + EFLR     RPR+NT +AV RIR+  AYA H F Q++ F+Y+HTPIIT SDCEGAGEMF+VTTL
Sbjct:  106 YPLQKKRHSFEFLRSIAHLRPRSNTFSAVFRIRSLAAYAVHKFFQEKNFVYVHTPIITASDCEGAGEMFRVTTL 179          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_CLOTH (Asparaginyl-tRNA synthetase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=asnS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.997e-20
Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSE 312
            YP+ K + + E+LR     RPRTNT +AV R+R+ LAYA H F Q++GF+Y+HTPIIT SD EGAG+MF+VTTL           I NPP  E
Sbjct:  107 YPLQKKRHSFEYLRTIAHLRPRTNTFSAVFRVRSLLAYAIHKFFQERGFVYVHTPIITGSDAEGAGQMFKVTTLD----------INNPPRKE 189          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_PSEHT (Asparaginyl-tRNA synthetase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=asnS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            +P  YP+   + ++E+LR+    RPRTN I AV R+RN LA A H F  +QGFL+I TPIIT SDCEGAGEMF+V+TL
Sbjct:  104 NPDSYPMAAKRHSIEYLREHAHLRPRTNMIGAVTRVRNCLAQAIHRFYHEQGFLWISTPIITASDCEGAGEMFRVSTL 181          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_CLOAB (Asparaginyl-tRNA synthetase OS=Clostridium acetobutylicum GN=asnS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSE 312
            YP+ K + TLE+LR     RPR+NT +AV R+R+  AYA H F Q++ F+Y++TP+IT SD EGAGEMFQVTTL           +KNPP +E
Sbjct:  106 YPLQKKRHTLEYLRSIAHLRPRSNTFSAVFRVRSLAAYAVHKFFQERDFVYVNTPLITASDAEGAGEMFQVTTLD----------LKNPPKNE 188          
The following BLAST results are available for this feature:
BLAST of CX294126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYN_CLONN7.709e-2152.63Asparaginyl-tRNA synthetase OS=Clostridium novyi (... [more]
SYN_SOLUE1.007e-2059.26Asparaginyl-tRNA synthetase OS=Solibacter usitatus... [more]
SYN_CLOBB1.315e-2055.95Asparaginyl-tRNA synthetase OS=Clostridium botulin... [more]
SYN_CLOBA1.315e-2055.95Asparaginyl-tRNA synthetase OS=Clostridium botulin... [more]
SYN_DESHY1.717e-2061.54Asparaginyl-tRNA synthetase OS=Desulfitobacterium ... [more]
SYN_PHOPR2.243e-2056.63Asparaginyl-tRNA synthetase OS=Photobacterium prof... [more]
SYN_CLOTE2.929e-2060.81Asparaginyl-tRNA synthetase OS=Clostridium tetani ... [more]
SYN_CLOTH4.997e-2052.69Asparaginyl-tRNA synthetase OS=Clostridium thermoc... [more]
SYN_PSEHT6.526e-2057.69Asparaginyl-tRNA synthetase OS=Pseudoalteromonas h... [more]
SYN_CLOAB6.526e-2051.61Asparaginyl-tRNA synthetase OS=Clostridium acetobu... [more]

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Properties
Property NameValue
Genbank descriptionC05011D07SK AbsAOv1 Citrus clementina cDNA clone C05011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294126 ID=CX294126; Name=CX294126; organism=Citrus clementina; type=EST; length=502bp
GTGCTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTCTACATTCACACTCCAAT
TATCACCACCAGTGATTGTGAGGGTGCTGGTGAGATGTTTCAAGTTACAA
CTCTAATAAGTGATGCTGACAAGTTGGAGAAGGAACTGATCAAGAATCCT
CCTCCATCAGAAGCTGACATAGAAGCCGCCAAGCTTGTTGTCAAGGAGAA
AGGAGAGGCTGTTGCAAAACTAAAATCTGATAAAGCAGGCAAGGAGGCGA
TAAGTGCTAGTGTTACTGAACTTACAAAAGCGAAAGAGAATCTTGCAAGG
CTCGAGGAAAGATCAAAGCTTAAGCCAGGAATCCCACAAAAGATGGAAGA
TT
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