CX294126

Overview
NameCX294126
Unique NameCX294126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_ANASP (Asparaginyl-tRNA synthetase OS=Anabaena sp. (strain PCC 7120) GN=asnS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.454e-19
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            G  DP  YP+ K + + EFLR     R RTN+  AV R+RNA + A H F Q++GFL++HTPIIT SDCEGAGE+F VT+L
Sbjct:   99 GEADPETYPLQKKRHSFEFLRTIGHLRSRTNSFGAVFRVRNACSAAIHQFFQERGFLWVHTPIITASDCEGAGELFSVTSL 179          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_MICAN (Asparaginyl-tRNA synthetase OS=Microcystis aeruginosa (strain NIES-843) GN=asnS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.899e-19
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   25 PAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            P  YP+ K + + EFLR     R RTNT+ AV R+RNA A A H+F Q++GF+++HTPIIT +DCEGAGE+F VT+L
Sbjct:  101 PPDYPLQKKRHSFEFLRTIAHLRARTNTLGAVMRVRNACATAIHSFFQEKGFIWVHTPIITANDCEGAGELFTVTSL 177          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_IDILO (Asparaginyl-tRNA synthetase OS=Idiomarina loihiensis GN=asnS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.899e-19
Identity = 43/78 (55.13%), Postives = 58/78 (74.36%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN   AV R+RNAL+ A H F  ++G+L++ TPIITTSDCEGAGEMF+V+TL
Sbjct:  105 DPDTYPMAPKRHSMEYLREYAHLRPRTNITGAVMRVRNALSQAIHRFFHEEGYLWVSTPIITTSDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SYNP2 (Asparaginyl-tRNA synthetase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=asnS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.480e-19
Identity = 48/91 (52.75%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKE 285
            G  DP  YP+ K + + EFLR     R +TNT+ AV R+RNA A A H F Q++GF++ HTPIIT SDCEGAGEMF VT       K  KE
Sbjct:   96 GEADPETYPLQKKRHSFEFLRTIGHLRGKTNTMGAVMRVRNACATAIHQFFQERGFIWAHTPIITASDCEGAGEMFAVTNFDLANPKRTKE 186          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHELP (Asparaginyl-tRNA synthetase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=asnS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.480e-19
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E LR+    RPRTN I AVAR+RN L++A H F  ++GF+++ TP+IT SDCEGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEHLRELAHLRPRTNIIGAVARVRNCLSHAIHNFYNEEGFIWVSTPLITASDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_BACFR (Asparaginyl-tRNA synthetase OS=Bacteroides fragilis GN=asnS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.480e-19
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            YP+ K   ++EFLR+    RPRTNT  AV RIR+ +A A H F  ++GF Y HTPIIT SDCEGAG+MFQVTT+
Sbjct:  107 YPLQKKGHSMEFLREIAHLRPRTNTFGAVFRIRHNMAIAIHKFFHEKGFFYFHTPIITASDCEGAGQMFQVTTM 180          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_BACFN (Asparaginyl-tRNA synthetase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=asnS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.480e-19
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            YP+ K   ++EFLR+    RPRTNT  AV RIR+ +A A H F  ++GF Y HTPIIT SDCEGAG+MFQVTT+
Sbjct:  107 YPLQKKGHSMEFLREIAHLRPRTNTFGAVFRIRHNMAIAIHKFFHEKGFFYFHTPIITASDCEGAGQMFQVTTM 180          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHEDO (Asparaginyl-tRNA synthetase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=asnS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.239e-19
Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E LR+    RPRTN I AVAR+RN L+ A H F  +QGF+++ TP+IT SDCEGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEHLRELAHLRPRTNIIGAVARVRNCLSQAIHRFYHEQGFIWVSTPLITASDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHEAM (Asparaginyl-tRNA synthetase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=asnS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.239e-19
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E LRD    RPRTN I AVAR+RN L+ A H F  + GF+++ TPIIT SDCEGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEHLRDVAHLRPRTNIIGAVARVRNCLSQAIHRFYHENGFIWVSTPIITASDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_BORGA (Asparaginyl-tRNA synthetase OS=Borrelia garinii GN=asnS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.239e-19
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   10 VGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            +G  D   YP+ K + T EFLR+    R RTNT  A+AR+RN ++Y  H + QK GF YI+TPIIT++D EGAGEMF+V+TL
Sbjct:   98 IGEADSKTYPLQKKRHTFEFLREIPHLRIRTNTFGAIARVRNKISYKIHEYFQKNGFFYINTPIITSNDGEGAGEMFRVSTL 179          
The following BLAST results are available for this feature:
BLAST of CX294126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYN_ANASP1.454e-1955.56Asparaginyl-tRNA synthetase OS=Anabaena sp. (strai... [more]
SYN_MICAN1.899e-1955.84Asparaginyl-tRNA synthetase OS=Microcystis aerugin... [more]
SYN_IDILO1.899e-1955.13Asparaginyl-tRNA synthetase OS=Idiomarina loihiens... [more]
SYN_SYNP22.480e-1952.75Asparaginyl-tRNA synthetase OS=Synechococcus sp. (... [more]
SYN_SHELP2.480e-1953.85Asparaginyl-tRNA synthetase OS=Shewanella loihica ... [more]
SYN_BACFR2.480e-1959.46Asparaginyl-tRNA synthetase OS=Bacteroides fragili... [more]
SYN_BACFN2.480e-1959.46Asparaginyl-tRNA synthetase OS=Bacteroides fragili... [more]
SYN_SHEDO3.239e-1955.13Asparaginyl-tRNA synthetase OS=Shewanella denitrif... [more]
SYN_SHEAM3.239e-1956.41Asparaginyl-tRNA synthetase OS=Shewanella amazonen... [more]
SYN_BORGA3.239e-1953.66Asparaginyl-tRNA synthetase OS=Borrelia garinii GN... [more]

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Properties
Property NameValue
Genbank descriptionC05011D07SK AbsAOv1 Citrus clementina cDNA clone C05011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294126 ID=CX294126; Name=CX294126; organism=Citrus clementina; type=EST; length=502bp
GTGCTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTCTACATTCACACTCCAAT
TATCACCACCAGTGATTGTGAGGGTGCTGGTGAGATGTTTCAAGTTACAA
CTCTAATAAGTGATGCTGACAAGTTGGAGAAGGAACTGATCAAGAATCCT
CCTCCATCAGAAGCTGACATAGAAGCCGCCAAGCTTGTTGTCAAGGAGAA
AGGAGAGGCTGTTGCAAAACTAAAATCTGATAAAGCAGGCAAGGAGGCGA
TAAGTGCTAGTGTTACTGAACTTACAAAAGCGAAAGAGAATCTTGCAAGG
CTCGAGGAAAGATCAAAGCTTAAGCCAGGAATCCCACAAAAGATGGAAGA
TT
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