CX294126

Overview
NameCX294126
Unique NameCX294126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_XANC5 (Asparaginyl-tRNA synthetase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=asnS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 49/83 (59.04%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   10 VGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V DP  YPI    +T EFLR+    RPRTN   AV RIRN LA A H F  + GF +I TPIITTSD EGAG+MF+V+TL
Sbjct:   98 VGWVEDPLTYPIQPKPMTPEFLREVAHLRPRTNLFGAVTRIRNCLAQAVHRFFHQNGFNWISTPIITTSDAEGAGQMFRVSTL 180          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_XANAC (Asparaginyl-tRNA synthetase OS=Xanthomonas axonopodis pv. citri GN=asnS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 49/83 (59.04%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   10 VGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V DP  YPI    +T EFLR+    RPRTN   AV RIRN LA A H F  + GF +I TPIITTSD EGAG+MF+V+TL
Sbjct:   98 VGWVEDPLTYPIQPKPMTPEFLREVAHLRPRTNLFGAVTRIRNCLAQAVHRFFHQNGFNWISTPIITTSDAEGAGQMFRVSTL 180          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_RHOBA (Asparaginyl-tRNA synthetase OS=Rhodopirellula baltica GN=asnS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 48/98 (48.98%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   10 VGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPP 303
            +G  D   YP+ K + + E LR+    R RTNT+ AV R+RN ++ + H F   +GF Y+HTPIIT SDCEGAGEMF+VTTL      LEK    N P
Sbjct:  127 IGWCDGETYPLQKKRHSFEKLREWSHLRARTNTLGAVMRVRNRISQSIHRFFDDEGFNYLHTPIITASDCEGAGEMFRVTTL-----NLEKLAGSNRP 219          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_COLP3 (Asparaginyl-tRNA synthetase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=asnS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++EFLR++   RPRTN   AV R+RN LA A H FL  +G+ +I TP+IT SDCEGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEFLREQAHLRPRTNIGGAVTRVRNCLAQAVHRFLHSKGYFWISTPLITGSDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_VIBVY (Asparaginyl-tRNA synthetase OS=Vibrio vulnificus (strain YJ016) GN=asnS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   10 VGMVDPAK-YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V+ A  YP+ KT+ ++E+LR+    RPRTN I AVAR+R++L+ A H F  +QG+ ++  P+IT SDCEGAGEMF+V+TL
Sbjct:  100 VGWVEDADTYPMAKTRHSIEYLREVAHLRPRTNVIGAVARVRHSLSQAIHRFYHEQGYYWLSAPLITASDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_VIBVU (Asparaginyl-tRNA synthetase OS=Vibrio vulnificus GN=asnS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   10 VGMVDPAK-YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V+ A  YP+ KT+ ++E+LR+    RPRTN I AVAR+R++L+ A H F  +QG+ ++  P+IT SDCEGAGEMF+V+TL
Sbjct:  100 VGWVEDADTYPMAKTRHSIEYLREVAHLRPRTNVIGAVARVRHSLSQAIHRFYHEQGYYWLSAPLITASDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_VIBCH (Asparaginyl-tRNA synthetase OS=Vibrio cholerae GN=asnS PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   10 VGMVDPAK-YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V+ A  YP+ KT+ ++E+LR+    RPRTN I AVAR+RN LA A H F  +QG+ ++  P+IT SD EGAGEMF+V+TL
Sbjct:  100 VGWVEDADTYPMAKTRHSIEYLREVAHLRPRTNVIGAVARVRNCLAQAIHRFYHEQGYFWVSAPLITASDAEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_PELPD (Asparaginyl-tRNA synthetase OS=Pelobacter propionicus (strain DSM 2379) GN=asnS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 49/113 (43.36%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVVKEKGEAVAKL 372
            YP+ K + + E+LR+    RPR+NT  AV R+R+ LA A H F     FLY+HTPIIT SDCEGAGE+F+VTTL    D     L++  P    D    K  +   G+   +L
Sbjct:  103 YPLQKKRHSFEYLREIAHLRPRSNTFGAVFRLRSRLAQAIHRFFGDNNFLYVHTPIITASDCEGAGELFRVTTL----DAASPPLLEGRPDFGQDFFGQKTGLTVSGQLEGEL 211          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_CLOBL (Asparaginyl-tRNA synthetase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=asnS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            YP+ K + T E+LR     RPR+N  +AV R+R+  AYA H F Q++GF+Y +TPIIT SDCEGAGEMFQ+TT+
Sbjct:  106 YPLQKKRHTFEYLRTIAHLRPRSNAFSAVFRVRSLAAYAVHKFFQERGFVYTNTPIITGSDCEGAGEMFQLTTM 179          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_CLOBH (Asparaginyl-tRNA synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=asnS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            YP+ K + T E+LR     RPR+N  +AV R+R+  AYA H F Q++GF+Y +TPIIT SDCEGAGEMFQ+TT+
Sbjct:  106 YPLQKKRHTFEYLRTIAHLRPRSNAFSAVFRVRSLAAYAVHKFFQERGFVYTNTPIITGSDCEGAGEMFQLTTM 179          
The following BLAST results are available for this feature:
BLAST of CX294126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYN_XANC59.423e-1959.04Asparaginyl-tRNA synthetase OS=Xanthomonas campest... [more]
SYN_XANAC9.423e-1959.04Asparaginyl-tRNA synthetase OS=Xanthomonas axonopo... [more]
SYN_RHOBA9.423e-1948.98Asparaginyl-tRNA synthetase OS=Rhodopirellula balt... [more]
SYN_COLP39.423e-1955.13Asparaginyl-tRNA synthetase OS=Colwellia psychrery... [more]
SYN_VIBVY1.231e-1853.01Asparaginyl-tRNA synthetase OS=Vibrio vulnificus (... [more]
SYN_VIBVU1.231e-1853.01Asparaginyl-tRNA synthetase OS=Vibrio vulnificus G... [more]
SYN_VIBCH1.231e-1854.22Asparaginyl-tRNA synthetase OS=Vibrio cholerae GN=... [more]
SYN_PELPD1.231e-1843.36Asparaginyl-tRNA synthetase OS=Pelobacter propioni... [more]
SYN_CLOBL1.231e-1856.76Asparaginyl-tRNA synthetase OS=Clostridium botulin... [more]
SYN_CLOBH1.231e-1856.76Asparaginyl-tRNA synthetase OS=Clostridium botulin... [more]

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Properties
Property NameValue
Genbank descriptionC05011D07SK AbsAOv1 Citrus clementina cDNA clone C05011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294126 ID=CX294126; Name=CX294126; organism=Citrus clementina; type=EST; length=502bp
GTGCTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTCTACATTCACACTCCAAT
TATCACCACCAGTGATTGTGAGGGTGCTGGTGAGATGTTTCAAGTTACAA
CTCTAATAAGTGATGCTGACAAGTTGGAGAAGGAACTGATCAAGAATCCT
CCTCCATCAGAAGCTGACATAGAAGCCGCCAAGCTTGTTGTCAAGGAGAA
AGGAGAGGCTGTTGCAAAACTAAAATCTGATAAAGCAGGCAAGGAGGCGA
TAAGTGCTAGTGTTACTGAACTTACAAAAGCGAAAGAGAATCTTGCAAGG
CTCGAGGAAAGATCAAAGCTTAAGCCAGGAATCCCACAAAAGATGGAAGA
TT
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