CX294360
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS261_ARATH (40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2) HSP 1 Score: 132.109 bits (331), Expect = 1.490e-30 Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 3 Query: 60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVRFNKD 377 M KR + GRNK+ RGHV P+RCSNC +C PKDKAIKRF +RN+VE AAIRD+ +ASV+ Y++PK+Y K QYCVSCAIH +V PPPR K+ Sbjct: 1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKE 106
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_BRUPA (40S ribosomal protein S26 (Fragment) OS=Brugia pahangi PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.648e-29 Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 3 Query: 60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKI 308 M KR ++GRNK GRGHV+P+RC+NC RC PKDKAIK+F +RN+V +AA+RDISDAS + Y++PK+Y KL YCVSCAIH K+ Sbjct: 1 MTTKRRNHGRNKKGRGHVRPIRCTNCGRCAPKDKAIKKFVVRNIVVAAAVRDISDASAYDSYALPKLYHKLHYCVSCAIHSKV 83
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_CAEEL (40S ribosomal protein S26 OS=Caenorhabditis elegans GN=rps-26 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 3.671e-29 Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 3 Query: 60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPR 359 M KR ++GRNK RGHV +RC+NC RC PKDKAIK+F +RN+VE+AA+RDI DAS + +Y++PK+Y KL YC++CAIH K+V PPPR Sbjct: 1 MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPR 100
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_ORYSJ (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica GN=RPS26 PE=2 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 4.059e-28 Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = 3 Query: 60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVRFNKD 377 M KR + GRNK+GRGHVK +RCSNC++C PKDKAIKRF +RN+VE AAIRD+ +A V Y +PK+Y K+ +CVSCAIH IV PP R R +D Sbjct: 1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERFRRRED 106
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_DICDI (40S ribosomal protein S26 OS=Dictyostelium discoideum GN=rps26 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.035e-23 Identity = 50/86 (58.14%), Postives = 66/86 (76.74%), Query Frame = 3 Query: 60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVF--AEYSVPKMYLKLQYCVSCAIHGKIV 311 M +KR ++GR+K+GRG V +RC+NC+RC PKDKA+KRF IR +VE+AA++DISD VF Y P+ Y+K QYC+SCAIH IV Sbjct: 1 MTQKRRNHGRSKHGRGSVPYIRCTNCARCVPKDKAVKRFYIRPIVENAAVKDISDQGVFNVKGYKFPRTYVKSQYCISCAIHSHIV 86
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_OXYNO (40S ribosomal protein S26 OS=Oxytricha nova GN=RPS26 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.652e-21 Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 3 Query: 60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFA--EYSVPKMYLKLQYCVSCAIHGKIV 311 M KR +NGRNK +GH VRC+NC R KDKAIKRF RNMV++++ RDI + +A ++++PK+Y+KL YCVSCAIH +IV Sbjct: 1 MPSKRRNNGRNKKNKGHADTVRCTNCGRVVSKDKAIKRFQQRNMVDASSKRDIQENYAYAQSDFTMPKIYVKLSYCVSCAIHARIV 86
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_ENCCU (40S ribosomal protein S26 OS=Encephalitozoon cuniculi GN=RPS26 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 9.379e-17 Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 3 Query: 72 RASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIV 311 R ++GR K RG ++C C TPKDKAIKRF I++++E A+ D+ A+++ + VP+M K Q+CVSCA H KIV Sbjct: 2 RRNHGRGKKNRGSAGSIQCDKCGSVTPKDKAIKRFRIQSLIEQASFDDLKQATIYDVFEVPRMGYKSQFCVSCACHAKIV 81 The following BLAST results are available for this feature:
BLAST of CX294360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX294360 ID=CX294360; Name=CX294360; organism=Citrus clementina; type=EST; length=518bpback to top |