CX294813

Overview
NameCX294813
Unique NameCX294813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14254 contig Ccv1_Contig14254:1194..1783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.816e-22
Identity = 61/179 (34.08%), Postives = 94/179 (52.51%), Query Frame = 3
Query:   57 SLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLI---YKLYTLLEYIQAGLSIRSWWVN 584
            ++ EA  V    YE  + WG ++G +YG   ED +TG  +H KGWRS YC   PHAF+G A  +    + Q  RW+TG LEI FS+ NP+  +    L   Q +AY+ I T+   ++  + Y  +PA   +T       VQ PT +  + L ++     +  +LE   AG+++  W+ N
Sbjct:  604 AIAEAVMVTAAAYEKKTGWGSDIGWVYGTVTEDVVTGYRMHIKGWRSRYCSIYPHAFIGTAPINLTERLFQVLRWSTGSLEIFFSRNNPLFGSTF--LHPLQRVAYINITTYPFTALFLIFYTTVPALSFVTGHFI---VQRPTTMFYVYLAIVLGTLLILAVLEVKWAGVTVFEWFRN 777          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.296e-21
Identity = 63/189 (33.33%), Postives = 89/189 (47.09%), Query Frame = 3
Query:   21 RKTGGYSSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPT-VLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            R    +S +   ++ EA  +  C YE G++WG +VG +YG   ED  TG  +H +GWRS Y    P AF G A  +    + Q  RWA G LEI FS+ N +LA    +L   Q  AYL    +   S+  + Y   PA  +I           PT V    AL +      +LE   +G+++  WW N
Sbjct:  485 RAEQSHSRDDGDAIAEASALVSCAYEDGTAWGRDVGWVYGTVTEDVATGFCMHRRGWRSAYYAAAPDAFRGTAPINLADRLHQVLRWAAGSLEIFFSRNNALLAGGRRRLHPLQRAAYLNTTVYPFTSLFLMAYCLFPAIPLIAGGGGWNAAPTPTYVAFLAALMVTLAAVAVLETRWSGIALGEWWRN 673          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.210e-21
Identity = 56/173 (32.37%), Postives = 90/173 (52.02%), Query Frame = 3
Query:   66 EAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            EA  V  C YE  + WG  VG +YG+  ED +TG  +H++GW+S YC+    AF G A  +    + Q  RWATG +EI FS+ N + A+   K++  Q +AYL +  +   S+  + Y  LPA  + +    +  +    +   L + +   L  +LE   +G+++  WW N
Sbjct:  799 EAISVVSCWYEEKTEWGTRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTHRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALFAS--SKMKVLQRIAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWRN 969          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.210e-21
Identity = 56/173 (32.37%), Postives = 90/173 (52.02%), Query Frame = 3
Query:   66 EAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            EA  V  C YE  + WG  VG +YG+  ED +TG  +H++GW+S YC+    AF G A  +    + Q  RWATG +EI FS+ N + A+   K++  Q +AYL +  +   S+  + Y  LPA  + +    +  +    +   L + +   L  +LE   +G+++  WW N
Sbjct:  799 EAISVVSCWYEEKTEWGTRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTHRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALFAS--SKMKVLQRIAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWRN 969          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.431e-21
Identity = 56/173 (32.37%), Postives = 89/173 (51.45%), Query Frame = 3
Query:   66 EAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            EA  V  C YE  + WG  +G +YG+  ED +TG  +H++GW+S YC+    AF G A  +    + Q  RWATG +EI FS+ N   A+   +++  Q +AYL +  +   S   + Y  LPA  + +    +  +    ++  L + +   L  LLE   +G+S+  WW N
Sbjct:  819 EAIAVISCWYEDKTEWGSRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNAFFAS--PRMKILQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIISITLCLLALLEIKWSGISLEEWWRN 989          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.399e-21
Identity = 58/174 (33.33%), Postives = 90/174 (51.72%), Query Frame = 3
Query:   66 EAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCL-PIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            EA  V  C YE  + WG  +G +YG+  ED +TG  +H++GWRS YC+ P   AF G A  +    + Q  RWATG +EI FS+ N + A+   +++  Q +AY     +   S+  L Y  LPA  + +    + ++    +   L + L   L  LLE   +G+++  WW N
Sbjct:  876 EAIGVISCFYEEKTEWGRRIGWIYGSVTEDVVTGYRMHNRGWRSVYCVTPRRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALFAS--PRMKLLQRVAYFNAGMYPFTSVFLLAYCLLPAVSLFSGKFIVQRLSATFLAFLLVITLTLCLLALLEIKWSGITLHEWWRN 1047          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.286e-20
Identity = 59/177 (33.33%), Postives = 91/177 (51.41%), Query Frame = 3
Query:   57 SLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTF-LPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            ++ E   V  C YE G+ WGD VG +Y    ED +TG  +H KGWRS YC   P AF G A  +    + Q  RW+ G LE+ FS+  P+LA    +L+  Q +AY  +  + + ++  + Y  LP   +  +  F + K     V   +A+  + ++  L+E   AGL++  WW N
Sbjct:  533 AMAEVEEVMTCAYEDGTEWGDGVGWVYDIATEDVVTGFRLHRKGWRSMYCAMEPDAFRGTAPINLTERLYQILRWSGGSLEMFFSRNCPLLAGC--RLRPMQRVAYANMTAYPVSALFMVVYDLLPVIWLSHHGEFHIQKPFSTYVAYLVAVIAMIEVIGLVEIKWAGLTLLDWWRN 707          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.861e-19
Identity = 56/172 (32.56%), Postives = 85/172 (49.42%), Query Frame = 3
Query:   60 LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSW 575
            L E      C YE G+ WG +VG +Y    ED +TG  +H  GWRS YC   P AF G A  +    + Q  RW+ G LE+ FS   P+LA    +L F Q +AY+ +  + + S+  L Y+  P   I     ++ K     VL  + +  + ++  ++E   AGL++  W
Sbjct:  546 LQELSDAMACAYEDGTDWGKDVGWVYNIATEDVVTGFRLHRTGWRSMYCRMEPDAFRGTAPINLTERLYQILRWSGGSLEMFFSHNCPLLAG--RRLNFMQRIAYINMTGYPVTSVFLLFYLLFPVIWIFRGIFYIQKPFPTYVLYLVIVIFMSEMIGMVEIKWAGLTLLDW 715          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.861e-19
Identity = 59/178 (33.15%), Postives = 83/178 (46.63%), Query Frame = 3
Query:   51 SRSLDEAHR-VADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKL-YTLLEYIQAGLSIRSWW 578
            +  L+E  R +  C YE+ + WG E G  YG   ED  TGL I  +GWRS Y  P    FLG    S    +   KRW  G L+I  S+ +P L    GK++    + Y     W + S P L Y+ +P+ C +   +  P+   P   IP A  ++     +L E +Q G S   WW
Sbjct:  423 ANELEEMGRSLVTCTYEHNTIWGIEKGVRYGCPLEDVTTGLQIQCRGWRSVYYNPKRKGFLGMTPTSLGQILVLYKRWTEGFLQISLSRYSPFLLG-HGKIKLGLQMGYSVCGFWAVNSFPTLYYVTIPSLCFLNGISLFPEKTSPW-FIPFAYVMVAAYSCSLAESLQCGDSAVEWW 598          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.769e-16
Identity = 52/175 (29.71%), Postives = 85/175 (48.57%), Query Frame = 3
Query:   60 LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            ++E   V    ++  + WG  VG +Y    ED +TG  IH +GWRS YC     AF G A  +    + Q  RW+ G LE+ FS  NP++     +LQ  Q ++YL +  + + S+  L Y   P   +I +  ++ +     V+  L + L+  +   LE   AG++   +W N
Sbjct:  542 VNELEMVVSASFDKETDWGKGVGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLIGG--RRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLVIILMIHMIGWLEIKWAGITWLDYWRN 714          
The following BLAST results are available for this feature:
BLAST of CX294813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLF6_ORYSJ5.816e-2234.08Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CSLF7_ORYSJ1.296e-2133.33Probable mixed-linked glucan synthase 7 OS=Oryza s... [more]
CSLD1_ORYSJ2.210e-2132.37Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI2.210e-2132.37Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD3_ARATH6.431e-2132.37Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]
CSLD4_ORYSJ8.399e-2133.33Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLF9_ORYSJ9.286e-2033.33Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLF8_ORYSJ7.861e-1932.56Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CSLE2_ORYSJ7.861e-1933.15Cellulose synthase-like protein E2 OS=Oryza sativa... [more]
CSLF3_ORYSJ4.769e-1629.71Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05056C06SK PhIFruit1 Citrus clementina cDNA clone C05056C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294813 ID=CX294813; Name=CX294813; organism=Citrus clementina; type=EST; length=590bp
CTCGTGCCGAATTCGGCACGAGGAAGACAGGAGGTTATTCAAGTAACATA
TCGAGATCGCTTGATGAAGCACACCGAGTTGCAGATTGTGGTTATGAGTA
TGGTAGTAGCTGGGGTGATGAGGTGGGGTGCTTGTATGGCGCCACAGCAG
AAGATAACTTAACTGGCTTGGTGATCCATTCAAAAGGCTGGAGATCAGGC
TACTGCTTGCCGATCCCACATGCCTTTCTTGGCTGTGCGTCTCCCAGCGG
CCCTGCTGGGATGAGACAACAGAAAAGGTGGGCCACGGGACTGCTTGAAA
TCCTATTCAGCAAACGTAACCCCATATTGGCTACTCTCATCGGGAAGCTC
CAATTTCGACAATGTTTGGCTTATTTGTGGATCCTTACTTGGGGCTTGCG
CTCAATTCCCGAGCTGTGCTACATTGCCCTTCCAGCTTATTGCATCATCA
CCAACTCCACTTTCCTGCCAAAGGTCCAGGAACCAACCGTATTGATCCCT
CTTGCACTTTTTTTGATCTACAAATTATATACTCTATTAGAGTACATTCA
AGCTGGTTTATCAATCCGTTCATGGTGGGTTAACAATTGT
back to top