CX294813

Overview
NameCX294813
Unique NameCX294813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14254 contig Ccv1_Contig14254:1194..1783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.229e-16
Identity = 52/175 (29.71%), Postives = 85/175 (48.57%), Query Frame = 3
Query:   60 LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            ++E   V    ++  + WG  VG +Y    ED +TG  IH +GWRS YC     AF G A  +    + Q  RW+ G LE+ FS  NP++     +LQ  Q ++YL +  + + S+  L Y   P   +I +  ++ +     V+  L + L+  +   LE   AG++   +W N
Sbjct:  542 VNELEMVVSASFDKETDWGKGVGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLIGG--RRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLMIILMIHMIGWLEIKWAGITWLDYWRN 714          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.135e-16
Identity = 52/166 (31.33%), Postives = 84/166 (50.60%), Query Frame = 3
Query:   87 CGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            C YE G+SWG +VG +Y    ED +TG  +H +GWRS Y    P AF G A  +    + Q  RW+ G LE+ FS  N +LA    +L   Q +AYL + T+ + ++    Y   P   +I+   ++ +     +L  +A+  +  +  + E   AG+++  W  N
Sbjct:  557 CAYEDGTSWGRDVGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG--RRLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRN 720          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.135e-16
Identity = 52/166 (31.33%), Postives = 84/166 (50.60%), Query Frame = 3
Query:   87 CGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            C YE G+SWG +VG +Y    ED +TG  +H +GWRS Y    P AF G A  +    + Q  RW+ G LE+ FS  N +LA    +L   Q +AYL + T+ + ++    Y   P   +I+   ++ +     +L  +A+  +  +  + E   AG+++  W  N
Sbjct:  527 CAYEDGTSWGRDVGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG--RRLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRN 690          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.062e-15
Identity = 51/169 (30.18%), Postives = 84/169 (49.70%), Query Frame = 3
Query:   78 VADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            V  CGY+ G+SWG + G +Y    ED  TG  +H +GWRS Y    P AF G A  +    + Q  RW+ G LE+ FS  N +LA    +L   Q +AYL + T+ + ++    Y   P   +I+   ++ +     +L  +A+  +  +  + E   +G+++  W  N
Sbjct:  563 VTACGYDLGTSWGRDAGWVYDIATEDVATGFRMHQQGWRSVYTSMEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG--RRLHPLQRIAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQQPFGEYLLYLVAIIAMIHVIGMFEVKWSGITVLDWCRN 729          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.367e-15
Identity = 57/175 (32.57%), Postives = 83/175 (47.43%), Query Frame = 3
Query:   60 LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKR-NPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIIT-NSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWW 578
            L EA  V  C +E  + WG E+G +YG       TG  +H++GW S YC P   AF   A  S    +    R A   + IL S+R +P+ A    +L   Q L Y+   ++ L S+P   Y ALPA C++T  STF   V     ++ + L         LE   + + +R+WW
Sbjct:  520 LKEAIHVVSCAFEERTRWGKEIGWMYGGGVA---TGFRMHARGWSSAYCSPARPAFRRYARASPADVLAGASRRAVAAMGILLSRRHSPVWAG--RRLGLLQRLGYVARASYPLASLPLTVYCALPAVCLLTGKSTFPSDVSYYDGVLLILLLFSVAASVALELRWSRVPLRAWW 689          
The following BLAST results are available for this feature:
BLAST of CX294813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLF3_ORYSI6.229e-1629.71Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF2_ORYSJ8.135e-1631.33Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]
CSLF1_ORYSJ8.135e-1631.33Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLF4_ORYSJ1.062e-1530.18Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CESAB_ORYSJ2.367e-1532.57Putative cellulose synthase A catalytic subunit 11... [more]

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Properties
Property NameValue
Genbank descriptionC05056C06SK PhIFruit1 Citrus clementina cDNA clone C05056C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294813 ID=CX294813; Name=CX294813; organism=Citrus clementina; type=EST; length=590bp
CTCGTGCCGAATTCGGCACGAGGAAGACAGGAGGTTATTCAAGTAACATA
TCGAGATCGCTTGATGAAGCACACCGAGTTGCAGATTGTGGTTATGAGTA
TGGTAGTAGCTGGGGTGATGAGGTGGGGTGCTTGTATGGCGCCACAGCAG
AAGATAACTTAACTGGCTTGGTGATCCATTCAAAAGGCTGGAGATCAGGC
TACTGCTTGCCGATCCCACATGCCTTTCTTGGCTGTGCGTCTCCCAGCGG
CCCTGCTGGGATGAGACAACAGAAAAGGTGGGCCACGGGACTGCTTGAAA
TCCTATTCAGCAAACGTAACCCCATATTGGCTACTCTCATCGGGAAGCTC
CAATTTCGACAATGTTTGGCTTATTTGTGGATCCTTACTTGGGGCTTGCG
CTCAATTCCCGAGCTGTGCTACATTGCCCTTCCAGCTTATTGCATCATCA
CCAACTCCACTTTCCTGCCAAAGGTCCAGGAACCAACCGTATTGATCCCT
CTTGCACTTTTTTTGATCTACAAATTATATACTCTATTAGAGTACATTCA
AGCTGGTTTATCAATCCGTTCATGGTGGGTTAACAATTGT
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