CX294813
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.229e-16 Identity = 52/175 (29.71%), Postives = 85/175 (48.57%), Query Frame = 3 Query: 60 LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584 ++E V ++ + WG VG +Y ED +TG IH +GWRS YC AF G A + + Q RW+ G LE+ FS NP++ +LQ Q ++YL + + + S+ L Y P +I + ++ + V+ L + L+ + LE AG++ +W N Sbjct: 542 VNELEMVVSASFDKETDWGKGVGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLIGG--RRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLMIILMIHMIGWLEIKWAGITWLDYWRN 714
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 8.135e-16 Identity = 52/166 (31.33%), Postives = 84/166 (50.60%), Query Frame = 3 Query: 87 CGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584 C YE G+SWG +VG +Y ED +TG +H +GWRS Y P AF G A + + Q RW+ G LE+ FS N +LA +L Q +AYL + T+ + ++ Y P +I+ ++ + +L +A+ + + + E AG+++ W N Sbjct: 557 CAYEDGTSWGRDVGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG--RRLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRN 720
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 8.135e-16 Identity = 52/166 (31.33%), Postives = 84/166 (50.60%), Query Frame = 3 Query: 87 CGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584 C YE G+SWG +VG +Y ED +TG +H +GWRS Y P AF G A + + Q RW+ G LE+ FS N +LA +L Q +AYL + T+ + ++ Y P +I+ ++ + +L +A+ + + + E AG+++ W N Sbjct: 527 CAYEDGTSWGRDVGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG--RRLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKWAGITLLDWCRN 690
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.062e-15 Identity = 51/169 (30.18%), Postives = 84/169 (49.70%), Query Frame = 3 Query: 78 VADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584 V CGY+ G+SWG + G +Y ED TG +H +GWRS Y P AF G A + + Q RW+ G LE+ FS N +LA +L Q +AYL + T+ + ++ Y P +I+ ++ + +L +A+ + + + E +G+++ W N Sbjct: 563 VTACGYDLGTSWGRDAGWVYDIATEDVATGFRMHQQGWRSVYTSMEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG--RRLHPLQRIAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQQPFGEYLLYLVAIIAMIHVIGMFEVKWSGITVLDWCRN 729
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.367e-15 Identity = 57/175 (32.57%), Postives = 83/175 (47.43%), Query Frame = 3 Query: 60 LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKR-NPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIIT-NSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWW 578 L EA V C +E + WG E+G +YG TG +H++GW S YC P AF A S + R A + IL S+R +P+ A +L Q L Y+ ++ L S+P Y ALPA C++T STF V ++ + L LE + + +R+WW Sbjct: 520 LKEAIHVVSCAFEERTRWGKEIGWMYGGGVA---TGFRMHARGWSSAYCSPARPAFRRYARASPADVLAGASRRAVAAMGILLSRRHSPVWAG--RRLGLLQRLGYVARASYPLASLPLTVYCALPAVCLLTGKSTFPSDVSYYDGVLLILLLFSVAASVALELRWSRVPLRAWW 689 The following BLAST results are available for this feature:
BLAST of CX294813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX294813 ID=CX294813; Name=CX294813; organism=Citrus clementina; type=EST; length=590bpback to top |