CX295630

Overview
NameCX295630
Unique NameCX295630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 44/94 (46.81%), Postives = 50/94 (53.19%), Query Frame = 3
Query:  198 KQPLKVKNEKAEDSSNKAARVEGKE--KKTQRVRKNLYRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            K PLK+      +    AA     E  K      K  YRG+RQRPWGK+AAEIRDP K G RVWLGTF+T             R+RG KA LNF
Sbjct:  119 KPPLKISLPAKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNF 212          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  177 YNGKSHPKQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKN----LYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            Y+ +S     L V N +++  S+K+ + E  EKKT+R R +    +YRG+R R WGKW +EIR+P K  R+WLGTF T              I+G  A LNF
Sbjct:    6 YSLRSERVTQLLVPNSESDSVSDKS-KAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNF 106          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 43/88 (48.86%), Postives = 50/88 (56.82%), Query Frame = 3
Query:  225 KAEDSSNKAARVEGKEKKT-----QRVRKNLYRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            K E + N  A +E K KK        V+   YRG+RQRPWGK+AAEIRDP K G RVWLGTF T             R+RG +A LNF
Sbjct:   87 KVEPTENFTA-MEEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNF 173          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 41/87 (47.13%), Postives = 46/87 (52.87%), Query Frame = 3
Query:  213 VKNEKAEDSSNKAARVEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            VK EK    S      +GK           YRG+RQRPWGK+AAEIRDP K G RVWLGTF T             R+RG +A LNF
Sbjct:  128 VKKEKTSPVSAAVTAAKGKH----------YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 204          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  279 TQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            T   R+  YRG+R+RPWG++AAEIRDP+K  RVWLGTF+T            + +RG KAK NF
Sbjct:    4 TTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNF 67          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 45/131 (34.35%), Postives = 65/131 (49.62%), Query Frame = 3
Query:  189 SHPKQPLKVKNEKAEDSSNKAA---RVEGKEKKTQRVRKNL-YRGIRQRPWGKWAAEIRDP-YKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNFXXXXXXXXXXXXKKRCMPSPELTQPRFETIGT 566
            S+ ++ L+++ E +  SS   +         KKT+R  +   YRG+R+RPWGK+AAEIRDP  KG R+WLGTF +             ++RG KA LNF              R     ++ QP+  T  T
Sbjct:   65 SYVQEILQMEAESSSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKYDAPVNSCRKRRRTDVPQPQGTTTST 195          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 3
Query:  264 GKEKKTQRVRKNL-YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            GK      +RK + +RG+R+RPWG++AAEIRDP K  RVWLGTF+T            +  RG KAK NF
Sbjct:   19 GKTMTMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNF 88          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 33/59 (55.93%), Postives = 37/59 (62.71%), Query Frame = 3
Query:  294 KNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            KNLYRG+RQR WGKW AEIR P    R+WLGTF T             ++RGD AKLNF
Sbjct:   68 KNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNF 126          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 3
Query:  198 KQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            ++ L   +++ +  ++   R   K   + +++K  +RG+RQRPWGKWAAEIRDP +  R+WLGTF T             R+RG  A  NF
Sbjct:   92 RKRLSSSSDETQSPASSRQRPNNKVSVSGQIKK--FRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNF 180          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 3
Query:  267 KEKKTQRVR-----KNLYRGIRQRPWGKWAAEIRDP-YKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            K++  Q+V      K  YRG+RQRPWGK+AAEIRDP  KG RVWLGTF+T             ++RG KA +NF
Sbjct:  121 KQEVVQKVELAPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNF 194          
The following BLAST results are available for this feature:
BLAST of CX295630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EF102_ARATH3.486e-1246.81Ethylene-responsive transcription factor 5 OS=Arab... [more]
DREB3_ARATH3.486e-1240.20Dehydration-responsive element-binding protein 3 O... [more]
EF101_ARATH5.947e-1248.86Ethylene-responsive transcription factor 2 OS=Arab... [more]
EF100_ARATH5.947e-1247.13Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF81_ARATH1.325e-1151.56Ethylene-responsive transcription factor 12 OS=Ara... [more]
EF107_ARATH1.325e-1134.35Ethylene-responsive transcription factor ERF107 OS... [more]
ERF80_ARATH1.730e-1148.57Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF56_ARATH1.730e-1155.93Ethylene-responsive transcription factor ERF056 OS... [more]
CRF3_ARATH1.730e-1137.36Ethylene-responsive transcription factor CRF3 OS=A... [more]
ERF5_NICSY2.260e-1150.00Ethylene-responsive transcription factor 5 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionC05074C03SK DroRLeaf1 Citrus clementina cDNA clone C05074C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295630 ID=CX295630; Name=CX295630; organism=Citrus clementina; type=EST; length=708bp
GAGGCAAAACTTTCTCATCCCAACACACAAATTAGAAGAGAAGAAAAAAT
AATATGTGTGGCGGTGCACTTATTGCTGATTATGATGAAGTCCGGCCGGT
CAGGCGCGAGCGCAAATTGACCTCCGAGGATCTCTGGTCCGAGTTTGGTT
CCATTTCCGACCTCTTGGGCTTGGACTACAATGGCAAATCCCACCCTAAG
CAACCTCTCAAAGTGAAAAATGAGAAGGCTGAAGATTCAAGCAATAAAGC
TGCTCGTGTTGAGGGGAAGGAGAAGAAGACTCAGCGAGTTCGCAAGAACC
TGTACAGAGGAATACGGCAGAGGCCGTGGGGAAAATGGGCAGCTGAAATT
AGAGACCCTTACAAGGGCGTCCGCGTTTGGCTCGGCACTTTCAACACAGC
CGAAGAAGCCGCAAGAGCTTATGATGAAGCCGCCAAGCGTATCCGCGGCG
ACAAGGCCAAGCTCAACTTCGCTCAGCCGCCGCCGCCAATAGCTCCACCC
CCAGCTAAGAAACGCTGCATGCCATCCCCTGAGTTGACTCAGCCGAGATT
TGAAACCATCGGAACCCCACCGGCTCCGGCGCCGTCCCCGTGGGTGGGGT
TTGGGTATCAGAATGAGTTTTATCAACCCAGGGCAGTAGACGACGAGTTT
GAGCTGAAGCCAGCAATTTCGAGCTTGGAATCGTTTTTGGGATTGGAGCC
ATTATGAG
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