CX295630

Overview
NameCX295630
Unique NameCX295630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: DRE2G_ARATH (Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana GN=DREB2G PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 3
Query:  303 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLN 467
            +RG+RQR WGKW AEIR+P +G R+WLGTFNT            K++ G +AKLN
Sbjct:   34 FRGVRQRTWGKWVAEIREPNRGTRLWLGTFNTSVEAAMAYDEAAKKLYGHEAKLN 88          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 39/92 (42.39%), Postives = 50/92 (54.35%), Query Frame = 3
Query:  225 KAEDSSNKAARVEGKEKKTQRV----------RKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            + E SS+ AAR +GK K+ + V          +   YRG+RQRPWGK+AAEIRDP    R+WLGTF T              ++G KA  NF
Sbjct:   70 QGESSSSTAAR-KGKHKEEESVVVEDDVSTSVKPKKYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF 160          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 37/89 (41.57%), Postives = 47/89 (52.81%), Query Frame = 3
Query:  204 PLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            P K +     DS+ +   V G+ +K        YRG+RQRPWGKWAAEIRDP +  R+WLGTF T             ++RG  A  NF
Sbjct:   91 PTKDRKRINVDSTVQKPSVSGQNQKK-------YRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNF 172          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 3
Query:  303 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+T            +  RG KAK NF
Sbjct:   31 YRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 3
Query:  303 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+T            +  RG KAK NF
Sbjct:   25 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNF 80          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 3
Query:  291 RKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            +K LYRG+RQR WGKW AEIR P   +RVWLGT++T             ++RG+ A+LNF
Sbjct:  132 KKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNF 191          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 31/57 (54.39%), Postives = 35/57 (61.40%), Query Frame = 3
Query:  300 LYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            LYRG+RQR WGKW AEIR P    R+WLGTF T             +IRGD A+LNF
Sbjct:  110 LYRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNF 166          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 33/79 (41.77%), Postives = 40/79 (50.63%), Query Frame = 3
Query:  234 DSSNKAARVEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            DS         K+KK +   K +YRG R R WGKW +EIR+P K  R+WLGTF T              I+G  A LNF
Sbjct:    3 DSHGSDTECSSKKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNF 81          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 3
Query:  144 FGSISDLLGLDYNGKSHPKQPLKVK-NEKAEDSSNKAARVEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            +G + D   + +   +   + +K++  E+ E + + +           + +   YRG+RQRPWGK+AAEIRDP K G RVWLGT+ +             R+RG KA LNF
Sbjct:   53 YGFLQDAFSIGWTPSNLTSEEVKLEPREEIEPAMSTSVSPPTVAPAALQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNF 163          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 3
Query:  234 DSSNKAARVEGKEKKTQRVRKNL----YRGIRQRPWGKWAAEIRDP-YKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            +SS+     +   KK +R  + +    YRG+R+RPWGK+AAEIRDP  KG R+WLGTF +             ++RG KA LNF
Sbjct:   83 NSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNF 166          
The following BLAST results are available for this feature:
BLAST of CX295630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
DRE2G_ARATH3.855e-1152.73Dehydration-responsive element-binding protein 2G ... [more]
CRF6_ARATH3.855e-1142.39Ethylene-responsive transcription factor CRF6 OS=A... [more]
CRF4_ARATH3.855e-1141.57Ethylene-responsive transcription factor CRF4 OS=A... [more]
ERF79_ARATH5.034e-1155.36Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF78_ARATH6.575e-1155.36Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF61_ARATH6.575e-1150.00Ethylene-responsive transcription factor ERF061 OS... [more]
ERF57_ARATH6.575e-1154.39Ethylene-responsive transcription factor ERF057 OS... [more]
ERF42_ARATH6.575e-1141.77Ethylene-responsive transcription factor ERF042 OS... [more]
ERF1_SOLLC8.587e-1134.23Ethylene-responsive transcription factor 1 OS=Sola... [more]
EF106_ARATH8.587e-1142.86Ethylene-responsive transcription factor ERF106 OS... [more]

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Properties
Property NameValue
Genbank descriptionC05074C03SK DroRLeaf1 Citrus clementina cDNA clone C05074C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295630 ID=CX295630; Name=CX295630; organism=Citrus clementina; type=EST; length=708bp
GAGGCAAAACTTTCTCATCCCAACACACAAATTAGAAGAGAAGAAAAAAT
AATATGTGTGGCGGTGCACTTATTGCTGATTATGATGAAGTCCGGCCGGT
CAGGCGCGAGCGCAAATTGACCTCCGAGGATCTCTGGTCCGAGTTTGGTT
CCATTTCCGACCTCTTGGGCTTGGACTACAATGGCAAATCCCACCCTAAG
CAACCTCTCAAAGTGAAAAATGAGAAGGCTGAAGATTCAAGCAATAAAGC
TGCTCGTGTTGAGGGGAAGGAGAAGAAGACTCAGCGAGTTCGCAAGAACC
TGTACAGAGGAATACGGCAGAGGCCGTGGGGAAAATGGGCAGCTGAAATT
AGAGACCCTTACAAGGGCGTCCGCGTTTGGCTCGGCACTTTCAACACAGC
CGAAGAAGCCGCAAGAGCTTATGATGAAGCCGCCAAGCGTATCCGCGGCG
ACAAGGCCAAGCTCAACTTCGCTCAGCCGCCGCCGCCAATAGCTCCACCC
CCAGCTAAGAAACGCTGCATGCCATCCCCTGAGTTGACTCAGCCGAGATT
TGAAACCATCGGAACCCCACCGGCTCCGGCGCCGTCCCCGTGGGTGGGGT
TTGGGTATCAGAATGAGTTTTATCAACCCAGGGCAGTAGACGACGAGTTT
GAGCTGAAGCCAGCAATTTCGAGCTTGGAATCGTTTTTGGGATTGGAGCC
ATTATGAG
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