CX296728
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.228e-24 Identity = 58/128 (45.31%), Postives = 76/128 (59.38%), Query Frame = 3 Query: 327 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 A + S W+G + ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I Q +L Sbjct: 6 ASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWATQVIL 130
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23 Identity = 57/123 (46.34%), Postives = 74/123 (60.16%), Query Frame = 3 Query: 345 WYGEERPRWLGPIPYDY-PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 +YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAMLGALG PE+L G E VW++ G LDYLG P L +Q ++ + Q +L Sbjct: 36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGT-KFGEAVWFKAGAQIFSEGGLDYLGNPS--LVHAQNIVATSAVQVIL 155
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23 Identity = 58/134 (43.28%), Postives = 77/134 (57.46%), Query Frame = 3 Query: 309 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E W++ G LDYLG L +Q ++ I Q +L Sbjct: 17 KTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEASWFKAGSQIFSEGGLDYLG--NQSLIHAQSILAIWATQVIL 147
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.142e-21 Identity = 56/136 (41.18%), Postives = 74/136 (54.41%), Query Frame = 3 Query: 303 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 K A + AR+ S WYG +R +LGP+ PSYLTGE PGDYG+D GLS DP F K E++H RWA+ LG + PE+L G E VW++ G L + G P L +Q ++ I CQ +L Sbjct: 34 KTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGV-KFGEGVWFKAGSQIFSEGGLSHPGNPS--LVHAQSILAIWACQVVL 166
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21 Identity = 53/118 (44.92%), Postives = 70/118 (59.32%), Query Frame = 3 Query: 300 SKFKALARQARNESLWYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 644 +K KA++ + + WYG +R +L D P YL GE+ GDYG+D GL K P F KY FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G Sbjct: 47 AKSKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 164
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.507e-20 Identity = 52/111 (46.85%), Postives = 65/111 (58.56%), Query Frame = 3 Query: 378 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 P + PSYLTGE PGDYG+D AGLS DP F K E++H+ WAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 108
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.638e-19 Identity = 50/119 (42.02%), Postives = 70/119 (58.82%), Query Frame = 3 Query: 354 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 + R ++LGP ++PSYLTGE PGDYG+D AGLS P F K E++H+R AM ALG + PE+L ++G E VW++ G LDYLG P L +Q ++ I + +L Sbjct: 56 DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQ-GFGEAVWFKAGAQIFSEGGLDYLGNPS--LVHAQSILAIWTTKVIL 171
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.550e-18 Identity = 58/163 (35.58%), Postives = 80/163 (49.08%), Query Frame = 3 Query: 222 AIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 A+++S L T + + S K + + S WYG +R ++LGP + PSYLTGE G LS DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I Q +L Sbjct: 7 ALSSSSLAGQAMKLAPSTPELGVGRVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LIHAQSILAIWATQVIL 158
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16 Identity = 53/148 (35.81%), Postives = 81/148 (54.73%), Query Frame = 3 Query: 273 TKKAALQDSSKFKALARQARNESLWYGEERPR-WLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL-DMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 TKK A KA+++ + + + +YG + W + + +P TGE PGDYG+D AGLS DP F++Y E++HAR +LGALG + PE+L D G +W++ G + Q L+YLG P L +Q ++ Q +L Sbjct: 40 TKKGA-------KAVSKSSSSANQFYGPDATSGW--DLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPS--LIHAQNIVATLAVQVVL 176
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13 Identity = 48/145 (33.10%), Postives = 69/145 (47.59%), Query Frame = 3 Query: 195 SAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKA-------LARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 605 SA + + A+A S ++ T KA+ + + AR A + +RP W G P P +L G LPGD+GFD GL+ DP + + E++H RWAMLGA G +PE+L +G L P W+ G Sbjct: 3 SACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI--LNTPSWYTAG 142 The following BLAST results are available for this feature:
BLAST of CX296728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296728 ID=CX296728; Name=CX296728; organism=Citrus clementina; type=EST; length=710bpback to top |