CX296728
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.882e-30 Identity = 68/156 (43.59%), Postives = 92/156 (58.97%), Query Frame = 3 Query: 249 LLQNRMLETK-KAALQDSSKFKALARQARNESL-WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 L+ NR L K +AA + + + A A++ + WYG +R +WLGP + P+YLTGE PGDYG+D AGLS DP F+KY E++HARWA+LGALG L PE+L EPVW++ G LDYLG P L +Q ++ Q +L Sbjct: 5 LISNRALTVKVEAAKKAAGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPA--LIHAQNIVATLAVQVVL 158
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 2.051e-28 Identity = 63/125 (50.40%), Postives = 79/125 (63.20%), Query Frame = 3 Query: 336 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G Q LDYLG P +L +Q ++ I CQ +L Sbjct: 45 ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGV-KFGEAVWFKAGSQIFQEGGLDYLGNP--NLVHAQSILAIWACQVVL 166
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.679e-28 Identity = 61/125 (48.80%), Postives = 79/125 (63.20%), Query Frame = 3 Query: 336 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 +S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I CQ +L Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWACQVVL 167
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.794e-28 Identity = 64/134 (47.76%), Postives = 82/134 (61.19%), Query Frame = 3 Query: 309 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 167
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27 Identity = 70/166 (42.17%), Postives = 92/166 (55.42%), Query Frame = 3 Query: 213 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 A KA+ N P L+ + + +K A A A+Q + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E W++ G LDYLG P L +Q ++ I CQ +L Sbjct: 14 AGKAVKNLPSSALIGDARVNMRKTA--------AKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAGWFKAGSQIFSDGGLDYLGNPS--LVHAQSLLAIWACQVVL 168
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27 Identity = 61/124 (49.19%), Postives = 77/124 (62.10%), Query Frame = 3 Query: 339 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I CQ +L Sbjct: 47 SIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVL 167
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.268e-27 Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 3 Query: 309 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 + +++ A ++++WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F + E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 40 RTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 170
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27 Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 3 Query: 336 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 +S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I Q +L Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV-TFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAAQVVL 167
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27 Identity = 61/131 (46.56%), Postives = 78/131 (59.54%), Query Frame = 3 Query: 318 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 AR + LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E++H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q ++ + Q +L Sbjct: 38 ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNP--NLVHAQSILAVLGFQVVL 166
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27 Identity = 69/168 (41.07%), Postives = 95/168 (56.55%), Query Frame = 3 Query: 210 TAVKAIANSPLGELLQN-RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 T+ A+ ++ G+ L+ L K A + + A +A + S+WYG +RP +LGP PSYL+GE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 3 TSTAALTSTFSGQQLKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGV-KFGEAVWFKAGSQIFAEGGLDYLGNPS--LVHAQSILAIWACQVIL 167 The following BLAST results are available for this feature:
BLAST of CX296728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296728 ID=CX296728; Name=CX296728; organism=Citrus clementina; type=EST; length=710bpback to top |