CX296740
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1) HSP 1 Score: 280.796 bits (717), Expect = 3.619e-79 Identity = 139/165 (84.24%), Postives = 148/165 (89.70%), Query Frame = -3 Query: 198 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 692 LTNFWGMDFTTDKLRSLVRKW TLIEA+VDVKTTDNYTLR+FCI FTK+ NQ K+TCYAQ+SQIRQIRRKMREIM A SCDLK LV+KFI E IGREIEKAT SIYPLQNV+IRKVKILKAPKFDLGKLMEVHGDYSEDVG K+ERPADEP+ E TEVIGA Sbjct: 97 LTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKLERPADEPVAEGVTEVIGA 261 HSP 2 Score: 34.2686 bits (77), Expect = 3.619e-79 Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 YRKIRLRAEDVQG+NV Sbjct: 81 YRKIRLRAEDVQGRNV 96
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1) HSP 1 Score: 280.411 bits (716), Expect = 6.156e-79 Identity = 138/165 (83.64%), Postives = 149/165 (90.30%), Query Frame = -3 Query: 198 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 692 LTNF+GMDFTTDKLRSLVRKW TLIEA+VDVKTTDNYTLRMFCIGFTKR NQVKRTCYAQ+SQIRQIRRKMREIM+ QA SCDLK LV KFI E+IG+EIEKAT SIYPLQNVFIRKVKILK+PKFDLGKLMEVHGDYSEDVG K+E PADE + E E++GA Sbjct: 97 LTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDVGTKVESPADETVVEGTPEIVGA 261 HSP 2 Score: 33.8834 bits (76), Expect = 6.156e-79 Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 +RKIRLRAEDVQGKNV Sbjct: 81 FRKIRLRAEDVQGKNV 96
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2) HSP 1 Score: 278.87 bits (712), Expect = 6.156e-79 Identity = 138/165 (83.64%), Postives = 152/165 (92.12%), Query Frame = -3 Query: 198 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 692 LTNFWGMD TTDKLRSLV+KW +LIEA+VDVKTTDN+TLRMFCIGFTK+ NQVKRTCYAQ+SQI+QIRRKMREIM+ QA +CDLK LV+KFI E IGREIEKAT SIYPLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK++RPA+E PEA TEVIGA Sbjct: 97 LTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPAEEAAPEA-TEVIGA 260 HSP 2 Score: 35.4242 bits (80), Expect = 6.156e-79 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 YRKIRLRAEDVQGKNV Sbjct: 81 YRKIRLRAEDVQGKNV 96
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3) HSP 1 Score: 274.248 bits (700), Expect = 3.311e-77 Identity = 137/166 (82.53%), Postives = 148/166 (89.16%), Query Frame = -3 Query: 198 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPEAPTEVIGA 692 LT FWGMDFTTDKLRSLV+KW TLIEA+VDVKTTD YTLRMFCI FTKR NQVKRTCYAQ+SQIRQIRRKM EIM+ +A+SCDLK LV KFI E IGREIEKAT IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY +EDVGVK++RPADE + E PTE+IGA Sbjct: 97 LTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 262 HSP 2 Score: 34.2686 bits (77), Expect = 3.311e-77 Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 YRKIRLRAEDVQG+NV Sbjct: 81 YRKIRLRAEDVQGRNV 96
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4) HSP 1 Score: 274.633 bits (701), Expect = 4.318e-77 Identity = 138/166 (83.13%), Postives = 151/166 (90.96%), Query Frame = -3 Query: 198 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DVGVKMERPADEPIPEAPTEVIGA 692 LTNFWGMDFTTDKLRSLVRKW +LIEA+VDVKTTD+YTLRMFCIGFTK+ NQ KRTCYAQ+SQIRQIRRKMREIM+ QA SCDLK LV+KFI E IGREIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+E D+G K++RPA+E + E PTEVIGA Sbjct: 97 LTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDDIGTKLDRPAEEAVAE-PTEVIGA 261 HSP 2 Score: 33.4982 bits (75), Expect = 4.318e-77 Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 +RKIRLRAED+QGKNV Sbjct: 81 FRKIRLRAEDIQGKNV 96
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1) HSP 1 Score: 271.166 bits (692), Expect = 1.250e-76 Identity = 136/165 (82.42%), Postives = 148/165 (89.70%), Query Frame = -3 Query: 198 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 692 LTNF+GMDFTTDKLRSLVRKW TLIEA+VDVKTTD+YTLRMFCIGFTK+ NQ KRTCYAQ+SQIRQIRRKM EIM QA+SCDLK LV KFI E IGREIEKAT SI+PLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+ERP +E + E TEV+GA Sbjct: 97 LTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLERPIEETMVEGETEVVGA 261 HSP 2 Score: 35.4242 bits (80), Expect = 1.250e-76 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 YRKIRLRAEDVQGKNV Sbjct: 81 YRKIRLRAEDVQGKNV 96
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3) HSP 1 Score: 271.552 bits (693), Expect = 2.126e-76 Identity = 135/166 (81.33%), Postives = 148/166 (89.16%), Query Frame = -3 Query: 198 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEAPTEVIGA 692 L FWGMDFTTDKLRSLV+KW TLIEA+VDVKTTD+YTLR+FCI FTKR NQVKRTCYAQ+SQIRQIRRKMR+IM+ +A+SCDLK LV KFI E IGREIEKAT IYPLQNVFIRKVKILKAPKFDLGKLM+VHGDYS EDVGVK++RPADE E PTE+IGA Sbjct: 97 LCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRPADEMAVEEPTEIIGA 262 HSP 2 Score: 34.2686 bits (77), Expect = 2.126e-76 Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 YRKIRLRAEDVQG+NV Sbjct: 81 YRKIRLRAEDVQGRNV 96
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2) HSP 1 Score: 260.766 bits (665), Expect = 3.609e-73 Identity = 134/167 (80.24%), Postives = 148/167 (88.62%), Query Frame = -3 Query: 198 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMI-AQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPEAPTEVIGA 692 LT FWGMDFTTDKLRSLV+KW TLIE++VDVKTTDNYTLR+FCI FTKR NQVKRTCYAQ+SQIRQIR KMREIMI +A+SCDLK LV KFI E IG++IEKAT IYPLQNVFIRKVKILKAPKFDL KLMEVHGDY +EDVGVK++RPADE + E PTE+IGA Sbjct: 97 LTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRPADE-VVEEPTEIIGA 262 HSP 2 Score: 34.2686 bits (77), Expect = 3.609e-73 Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 YRKIRLRAEDVQG+NV Sbjct: 81 YRKIRLRAEDVQGRNV 96
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 5.172e-73 Identity = 141/189 (74.60%), Postives = 158/189 (83.60%), Query Frame = -3 Query: 198 LQEDQTKS*RCPR--------EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 740 LQ+D+ +S R R + LTNFWGMDFTTDKLRSLV+KW TLIEA+VDVKTTD+YTLRMFCI FTK+ PNQ KRTCYAQ+SQIRQIRRKM EIM QA+SCDLK LV KFI E IGREIEKAT SI+PLQNV+IRKVKILKAPKFD+GKLMEVHGDYSEDVGVK++RPADE + EA E+ GA Sbjct: 73 LQKDEDQSFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRMFCIAFTKKRPNQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPADETVAEAEPEIPGA 261
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2) HSP 1 Score: 258.07 bits (658), Expect = 1.044e-72 Identity = 126/154 (81.82%), Postives = 140/154 (90.91%), Query Frame = -3 Query: 234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692 LTNFWGM FTTDKLRSLV+KW TLIEA+VDVKTTD Y LR+FCIGFTKR PNQVKRTCYAQASQIRQIRRKM EIM QA+SCDLK LV KFI E+IG+EIEKAT SI+PLQNVF+RKVKILKAPKFDLGKLMEVHGDY+ ED+G K++RPA++ Sbjct: 97 LTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAED 250 HSP 2 Score: 35.4242 bits (80), Expect = 1.044e-72 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 YRKIRLRAEDVQGKNV Sbjct: 81 YRKIRLRAEDVQGKNV 96 The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bpback to top |