CX297867

Overview
NameCX297867
Unique NameCX297867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C98A1_SORBI (Cytochrome P450 98A1 OS=Sorghum bicolor GN=CYP98A1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +TT  ++EWA+ EL+ N     K + EL++ VG+  ++ E+D   LPYLQ +VKE+             KAS +V+I G+ IPKGA V+VN WA+ RD   W +P  +
Sbjct:  305 DTTVISVEWAMAELVRNPRVQKKLQEELDRVVGRDRVMLETDFQNLPYLQAVVKESLRLHPPTPLMLPHKASTNVKIGGYDIPKGANVMVNVWAVARDPKVWSNPLEY 412          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C75A1_PETHY (Flavonoid 3',5'-hydroxylase 1 OS=Petunia hybrida GN=CYP75A1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 42/109 (38.53%), Postives = 63/109 (57.80%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFN 708
            +T+SS +EWA+ E++ N   L KA+ E++Q +G+   + ESDI  LPYL+ I KET              ++    + G+ IPK  ++ VN WAIGRD   W++P  FN
Sbjct:  304 DTSSSAIEWALAEMMKNPAILKKAQAEMDQVIGRNRRLLESDIPNLPYLRAICKETFRKHPSTPLNLPRISNEPCIVDGYYIPKNTRLSVNIWAIGRDPQVWENPLEFN 412          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C80A1_BERST (Berbamunine synthase OS=Berberis stolonifera GN=CYP80A1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  379 AETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            ++T S+ +EWA+ +L+ N + L+K R EL++ VG+ + ++ES  ++LPYLQ  VKET             +     ++ G+ IPKG  V VNA AIGRD   W DP  F
Sbjct:  292 SDTNSNIIEWALAQLIKNPDKLAKLREELDRVVGRSSTVKESHFSELPYLQACVKETMRLYPPISIMIPHRCMETCQVMGYTIPKGMDVHVNAHAIGRDPKDWKDPLKF 400          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C71A8_MENPI (Cytochrome P450 71A8 OS=Mentha piperita GN=CYP71A8 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +TT+  LEWA+TELL + E + K + E+ Q V   + I + DI ++ YL+ ++KET              A  DVE+ G+ +P G  V++NAWAIGRD ++WD+P  F
Sbjct:  311 DTTAVVLEWAMTELLRHPEIMKKLQSEVRQVVKDKHNITDDDIEKMHYLKAVMKETMRFHTPIPLLVPRVARNDVEVMGYDVPVGTMVMINAWAIGRDPTSWDEPEKF 418          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C71A1_PERAE (Cytochrome P450 71A1 OS=Persea americana GN=CYP71A1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 43/108 (39.81%), Postives = 66/108 (61.11%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +TT+ TLEWA+ EL+ + + + KA+ E+ + VGK   +EE D+ QL YL+ I+KET             +++ DV I G+ IP   +V +NAWAIGRD  +W++   F
Sbjct:  307 DTTAVTLEWAMAELIKHPDVMEKAQQEVRRVVGKKAKVEEEDLHQLHYLKLIIKETLRLHPVAPLLVPRESTRDVVIRGYHIPAKTRVFINAWAIGRDPKSWENAEEF 414          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C98A2_SOYBN (Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +TT+ ++EWA+ EL+ N     K + EL++ +G   ++ E+D + LPYLQ + KE              +A+A+V++ G+ IPKG+ V VN WA+ RD + W DP  F
Sbjct:  303 DTTAISVEWAMAELIRNPRVQQKVQEELDRVIGLERVMTEADFSNLPYLQCVTKEAMRLHPPTPLMLPHRANANVKVGGYDIPKGSNVHVNVWAVARDPAVWKDPLEF 410          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C84A1_ARATH (Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CYP84A1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 47/108 (43.52%), Postives = 66/108 (61.11%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            ET +S +EWA+TELL + E L + + EL + VG    +EESDI +L YL+  +KET              A  D  I GF IPK ++V++NA+AIGRD ++W DP +F
Sbjct:  322 ETVASAIEWALTELLRSPEDLKRVQQELAEVVGLDRRVEESDIEKLTYLKCTLKETLRMHPPIPLLLHETAE-DTSIDGFFIPKKSRVMINAFAIGRDPTSWTDPDTF 428          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C75A2_SOLME (Flavonoid 3',5'-hydroxylase OS=Solanum melongena GN=CYP75A2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +T+SS +EWA+TE++ N     KA+ E++Q +GK     ESDI  LPYL+ I KE               +S    I G+ IPK  ++ VN WAIGRD   W++P  F
Sbjct:  307 DTSSSVIEWALTEMMKNPTIFKKAQQEMDQIIGKNRRFIESDIPNLPYLRAICKEAFRKHPSTPLNLPRVSSDACTIDGYYIPKNTRLSVNIWAIGRDPDVWENPLEF 414          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C75A4_GENTR (Flavonoid 3',5'-hydroxylase OS=Gentiana triflora GN=CYP75A4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKA-SADVEITGFIIPKGAQVLVNAWAIGRDTSTW-DDPYSFN 708
            +T+SS +EWA+ ELL N   L++A+ E+++ +G+   + ESDI  LPYLQ I KET                   V++ G+ IPKG ++ VN WAIGRD S W D+P  F+
Sbjct:  312 DTSSSIIEWALAELLKNRTLLTRAQDEMDRVIGRDRRLLESDIPNLPYLQAICKETFRKHPSTPLNLPRNCIRGHVDVNGYYIPKGTRLNVNIWAIGRDPSVWGDNPNEFD 422          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C75A3_PETHY (Flavonoid 3',5'-hydroxylase 2 OS=Petunia hybrida GN=CYP75A3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +T+SS +EWA+ E++ N   L KA+ E++Q +G    + ESDI  LPYL+ I KET              ++    + G+ IPK  ++ VN WAIGRD   W++P  F
Sbjct:  304 DTSSSAIEWALAEMMKNPAILKKAQGEMDQVIGNNRRLLESDIPNLPYLRAICKETFRKHPSTPLNLPRISNEPCIVDGYYIPKNTRLSVNIWAIGRDPEVWENPLEF 411          
The following BLAST results are available for this feature:
BLAST of CX297867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
C98A1_SORBI3.282e-1839.81Cytochrome P450 98A1 OS=Sorghum bicolor GN=CYP98A1... [more]
C75A1_PETHY5.599e-1838.53Flavonoid 3',5'-hydroxylase 1 OS=Petunia hybrida G... [more]
C80A1_BERST7.312e-1839.45Berbamunine synthase OS=Berberis stolonifera GN=CY... [more]
C71A8_MENPI7.312e-1839.81Cytochrome P450 71A8 OS=Mentha piperita GN=CYP71A8... [more]
C71A1_PERAE1.247e-1739.81Cytochrome P450 71A1 OS=Persea americana GN=CYP71A... [more]
C98A2_SOYBN1.629e-1737.04Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=... [more]
C84A1_ARATH1.629e-1743.52Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CY... [more]
C75A2_SOLME2.779e-1739.81Flavonoid 3',5'-hydroxylase OS=Solanum melongena G... [more]
C75A4_GENTR4.740e-1741.44Flavonoid 3',5'-hydroxylase OS=Gentiana triflora G... [more]
C75A3_PETHY1.056e-1637.96Flavonoid 3',5'-hydroxylase 2 OS=Petunia hybrida G... [more]

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Properties
Property NameValue
Genbank descriptionC06006A12SK RindPdig24 Citrus clementina cDNA clone C06006A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297867 ID=CX297867; Name=CX297867; organism=Citrus clementina; type=EST; length=708bp
GAGGTTTTTTCTGAGTCTCAAACGACATTGTTTTATTGAATTTTCGGGGC
TTGACCCGGGGTTTGACCCGGGGTAAATAGCAGCACTCATAAACTTATCT
AATTGCCCAGCGTACTATCAGGAATAATAAGAACTTGGCAGCGCTTGGGG
CTGGCGAGTTCTGGCTAAATTCACTTGCAAATAACTGATGGTATATGTAA
CCAAATACAAATTTGAGTAATCTTGTTTCACTTCATCCTTTTGCGAACTT
CGTAAAAGTAGCTTAGAATCACCACTGCCACAGTAACTGCTACTCCAACT
GCACCTTGAGCTAATATGGTGCAATCATTTGCTGTTGATTTGGAGCCAGA
ACCGGCCTCGTGCCGAATTCGGCACGAGGCTGAAACGACTTCAAGCACAT
TGGAATGGGCAGTAACAGAGCTATTAAACAACTCAGAAGCATTATCAAAA
GCTAGATTGGAGTTGGAACAAAAAGTAGGCAAAGGCAACCTGATTGAGGA
ATCAGACATTACTCAATTACCTTATTTACAAACAATAGTTAAAGAGACCT
TAAGGTTGCACCCGCCAGTGCCGTTGTTACTCCCTCGCAAAGCCTCAGCA
GACGTAGAAATCACAGGCTTCATAATACCAAAGGGTGCGCAAGTTTTGGT
CAATGCATGGGCTATAGGCCGAGATACAAGCACATGGGATGACCCTTACT
CTTTTAAC
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