CX297867

Overview
NameCX297867
Unique NameCX297867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C79B3_ARATH (Tryptophan N-hydroxylase 2 OS=Arabidopsis thaliana GN=CYP79B3 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.379e-16
Identity = 39/108 (36.11%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +  S+ +EWA+ E++N  E L KA  E+++ VGK   ++ESDI +L Y++ I++E               A +D  + G+ IPKG+QVL++ + +GR+   W DP SF
Sbjct:  341 DNPSNAVEWAIAEMINKPEILHKAMEEIDRVVGKERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSF 448          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C79B1_SINAL (Cytochrome P450 79B1 OS=Sinapis alba GN=CYP79B1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +  S+ +EWA+ E++N  E L KA  E+++ VGK  L++ESDI +L Y++ I++E               A +D  + G+ IPKG+QVL++ + +GR+   W DP SF
Sbjct:  340 DNPSNAVEWAMAEMVNKPEILRKAMEEIDRVVGKERLVQESDIPKLNYVKAILREAFRLHPVAAFNLPHVALSDATVAGYHIPKGSQVLLSRYGLGRNPKVWADPLSF 447          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C93B1_GLYEC (Licodione synthase OS=Glycyrrhiza echinata GN=CYP93B1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +TT+ + EWA+ EL+     L K R E++  VGK  L+EESD   LPYLQ I+KET             +  A+  +  ++IP+ + + VN W+IGR+   WD+P  F
Sbjct:  307 DTTAISTEWALVELVKKPSVLQKVREEIDNVVGKDRLVEESDCPNLPYLQAILKET-FRLHPPVPMVTRRCVAECTVENYVIPEDSLLFVNVWSIGRNPKFWDNPLEF 413          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C71A6_NEPRA (Cytochrome P450 71A6 (Fragment) OS=Nepeta racemosa GN=CYP71A6 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 37/108 (34.26%), Postives = 65/108 (60.19%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +TT + LEWA++EL+ N  A+   + E+    G    IEESD+ ++PYL+ ++KE+             +++ D ++ G+ +  G +VL+N WAIGRD+S W++  +F
Sbjct:  314 DTTVTALEWALSELIKNPRAMKILQKEVRGVAGSKGEIEESDLEKMPYLKAVMKESLRLHAPVPLLVPRESTRDTKVLGYDVASGTRVLINCWAIGRDSSVWEESETF 421          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C71C2_MAIZE (Cytochrome P450 71C2 OS=Zea mays GN=CYP71C2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.240e-16
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVG-----KGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            ET+  TLE+ + EL+NN   + K + E+   +G     K +++ E D+  +PYL+  +KET              ++AD EI G+ +P G +VLV+AWA+GRD +TW+ P  F
Sbjct:  335 ETSYLTLEYGMAELINNRHVMEKLQTEVRTTMGSPDGKKLDMLAEEDLGSMPYLKATIKETLRLHPPAPFLLPHYSTADSEIDGYFVPAGTRVLVHAWALGRDRTTWEKPEEF 447          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C82A3_SOYBN (Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.844e-16
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            ++T+ TL WA++ LL N  AL KA+ E++ ++GK   I ESDI++L YLQ IVKET             + + +  + G+ I KG +++ N W I RD S W DP  F
Sbjct:  326 DSTAVTLTWALSLLLRNPLALGKAKEEIDMQIGKDEYIRESDISKLVYLQAIVKETLRLYPPAPFSSPREFTENCILGGYHIKKGTRLIHNLWKIHRDPSVWSDPLEF 433          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C71BX_ARATH (Cytochrome P450 71B36 OS=Arabidopsis thaliana GN=CYP71B36 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  385 TTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            T++ T+ WA+TEL+ N   + K + E+  ++GK ++I   DI QL YL+ ++ ET             +  ++ E+  ++IP   ++ VN WAIGRD  TW DP  F
Sbjct:  305 TSAITMTWAMTELMRNPRVMKKVQSEIRNQIGKKSMITLDDIDQLHYLKMVINETWRLHPPSPFLIPRQVMSEFELNDYVIPVKTRLYVNVWAIGRDPDTWKDPEEF 411          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C79B2_ARATH (Tryptophan N-hydroxylase 1 OS=Arabidopsis thaliana GN=CYP79B2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 39/108 (36.11%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +  S+ +EWA+ E++N  E L KA  E+++ VGK  L++ESDI +L Y++ I++E               A +D  + G+ IPKG+QVL++ + +GR+   W DP  F
Sbjct:  339 DNPSNAVEWAMAEMVNKPEILRKAMEEIDRVVGKERLVQESDIPKLNYVKAILREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWADPLCF 446          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C71DC_CATRO (Tabersonine 16-hydroxylase (Fragment) OS=Catharanthus roseus GN=CYP71D12 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFN 708
            ET+S+T++WA+ E++ N   + KA+ E+ +   +   ++E+ + QL YLQ ++KET             +     +I G+ IP  ++V+VNAWAIGRD + W +P  FN
Sbjct:  300 ETSSTTVDWAMCEMIKNPTVMKKAQEEVRKVFNEEGNVDETKLHQLKYLQAVIKETLRLHPPVPLLLPRECREQCKIKGYTIPSKSRVIVNAWAIGRDPNYWIEPEKFN 408          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C75A1_PINTA (Cytochrome P450 750A1 OS=Pinus taeda GN=CYP750A1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.525e-15
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTW 687
            ET+++ LEWA++ELL +  A+ K + E+E  VG+   ++ESD+  + YL  +VKET             ++   V + G+ IPK   V++N WAIGRD S W
Sbjct:  323 ETSANVLEWAMSELLRHPHAMKKLQQEIESVVGQQGTVKESDLASIVYLHCVVKETLRLYPSLPLALPHESLEAVTVGGYYIPKKTMVIMNLWAIGRDPSVW 424          
The following BLAST results are available for this feature:
BLAST of CX297867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
C79B3_ARATH1.379e-1636.11Tryptophan N-hydroxylase 2 OS=Arabidopsis thaliana... [more]
C79B1_SINAL3.072e-1637.04Cytochrome P450 79B1 OS=Sinapis alba GN=CYP79B1 PE... [more]
C93B1_GLYEC4.012e-1637.96Licodione synthase OS=Glycyrrhiza echinata GN=CYP9... [more]
C71A6_NEPRA4.012e-1634.26Cytochrome P450 71A6 (Fragment) OS=Nepeta racemosa... [more]
C71C2_MAIZE5.240e-1636.28Cytochrome P450 71C2 OS=Zea mays GN=CYP71C2 PE=2 S... [more]
C82A3_SOYBN6.844e-1639.81Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=... [more]
C71BX_ARATH8.938e-1634.58Cytochrome P450 71B36 OS=Arabidopsis thaliana GN=C... [more]
C79B2_ARATH1.167e-1536.11Tryptophan N-hydroxylase 1 OS=Arabidopsis thaliana... [more]
C71DC_CATRO1.167e-1534.86Tabersonine 16-hydroxylase (Fragment) OS=Catharant... [more]
C75A1_PINTA1.525e-1538.24Cytochrome P450 750A1 OS=Pinus taeda GN=CYP750A1 P... [more]

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Properties
Property NameValue
Genbank descriptionC06006A12SK RindPdig24 Citrus clementina cDNA clone C06006A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297867 ID=CX297867; Name=CX297867; organism=Citrus clementina; type=EST; length=708bp
GAGGTTTTTTCTGAGTCTCAAACGACATTGTTTTATTGAATTTTCGGGGC
TTGACCCGGGGTTTGACCCGGGGTAAATAGCAGCACTCATAAACTTATCT
AATTGCCCAGCGTACTATCAGGAATAATAAGAACTTGGCAGCGCTTGGGG
CTGGCGAGTTCTGGCTAAATTCACTTGCAAATAACTGATGGTATATGTAA
CCAAATACAAATTTGAGTAATCTTGTTTCACTTCATCCTTTTGCGAACTT
CGTAAAAGTAGCTTAGAATCACCACTGCCACAGTAACTGCTACTCCAACT
GCACCTTGAGCTAATATGGTGCAATCATTTGCTGTTGATTTGGAGCCAGA
ACCGGCCTCGTGCCGAATTCGGCACGAGGCTGAAACGACTTCAAGCACAT
TGGAATGGGCAGTAACAGAGCTATTAAACAACTCAGAAGCATTATCAAAA
GCTAGATTGGAGTTGGAACAAAAAGTAGGCAAAGGCAACCTGATTGAGGA
ATCAGACATTACTCAATTACCTTATTTACAAACAATAGTTAAAGAGACCT
TAAGGTTGCACCCGCCAGTGCCGTTGTTACTCCCTCGCAAAGCCTCAGCA
GACGTAGAAATCACAGGCTTCATAATACCAAAGGGTGCGCAAGTTTTGGT
CAATGCATGGGCTATAGGCCGAGATACAAGCACATGGGATGACCCTTACT
CTTTTAAC
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