CX297867

Overview
NameCX297867
Unique NameCX297867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 36/108 (33.33%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            ETT  ++EW + EL+N+ +  +K R E+++ +G G+ + E D+ +LPYLQ ++KET                 D ++ GF IP  +++LVNAW +  + + W  P  F
Sbjct:  310 ETTLWSIEWGIAELVNHQDIQNKVREEMDRVLGPGHQVTEPDLHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDPKLNGFDIPAESKILVNAWWLPNNPAHWKKPEEF 417          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: TCMO_GLYEC (Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza echinata GN=CYP73A14 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 36/108 (33.33%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            ETT  ++EW + EL+N+ E   K R E+++ +G G+ + E D+ +LPYLQ ++KET                 D ++ G+ IP  +++LVNAW +  + + W  P  F
Sbjct:  309 ETTLWSIEWGIAELVNHPEIQKKVRDEIDRVLGPGHQVTEPDMQKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPANWKRPEEF 416          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C83B1_ARATH (Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CYP83B1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTW-DDPYSF 705
            +T ++ + WA+T L+   EA+ KA+ E+   +G    + E DI  LPYL+ ++KE+             +  AD +I G+ IP    + VNAWA+ RDT+ W D+P  F
Sbjct:  302 DTAAAVVVWAMTYLIKYPEAMKKAQDEVRSVIGDKGYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEF 410          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C71AM_ARATH (Cytochrome P450 71A22 OS=Arabidopsis thaliana GN=CYP71A22 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 38/103 (36.89%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNL-IEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTW 687
            +T+ + +EWA+TELL+  E L++ + E+ + + KGN  + E DI  + YL+ ++KET             +++ DV +  + IP G QV++NAWAIGR+ +TW
Sbjct:  295 DTSYALMEWAMTELLHRPECLNRLQEEV-RTICKGNSSVSEDDIKDMNYLKAVIKETMRLHPPLPLMVPHESTQDVRLGDYHIPAGTQVMINAWAIGREAATW 396          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C71AE_ARATH (Cytochrome P450 71A14 OS=Arabidopsis thaliana GN=CYP71A14 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNL-IEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTW 687
            ETT + LEW +TEL+ + E + K + E+  K  K  L I E D+  + YL+ +VKE              + S D+++ G+ I  G QV++NAWAI RDT TW
Sbjct:  302 ETTYALLEWIMTELIRHPECMKKLQDEIRAKATKLILYISEEDVEDMKYLKAVVKEVLRLHPPLPLLVPRELSEDIKLKGYDIAAGTQVIINAWAIQRDTMTW 404          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: TCMO_POPTM (Trans-cinnamate 4-monooxygenase OS=Populus tremuloides GN=CYP73A13 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            ETT  ++EW + EL+N+ E   K R EL+  +G G+ I E D  +LPYL  +VKET                 D ++ GF IP  +++LVNAW +  + + W +P  F
Sbjct:  309 ETTLWSIEWGIAELVNHPEIQKKLRHELDTLLGPGHQITEPDTYKLPYLNAVVKETLRLRMAIPLLVPHMNLHDAKLGGFDIPAESKILVNAWWLANNPAHWKNPEEF 416          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: TCMO_POPKI (Trans-cinnamate 4-monooxygenase OS=Populus kitakamiensis GN=CYP73A16 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            ETT  ++EW + EL+N+ E   K R EL+  +G G+ I E D  +LPYL  +VKET                 D ++ GF IP  +++LVNAW +  + + W +P  F
Sbjct:  309 ETTLWSIEWGIAELVNHPEIQKKLRHELDTLLGPGHQITEPDTYKLPYLNAVVKETLRLRMAIPLLVPHMNLHDAKLGGFDIPAESKILVNAWWLANNPAHWKNPEEF 416          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C71BH_ARATH (Cytochrome P450 71B17 OS=Arabidopsis thaliana GN=CYP71B17 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGN-LIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +T + T+ W +TEL  N E + K + E+  ++G     I + D+ ++P+L  ++KET             +  A V++ G+ IP   ++LVNAWAIGRD   W DP  F
Sbjct:  307 DTGALTMIWTMTELARNPEIMKKVQGEIRDRLGNNRERITKEDLDKVPFLNLVIKETFRLHPVAPLLLPRETMAHVKVQGYDIPPKRRILVNAWAIGRDPKLWTDPEEF 415          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C71BC_ARATH (Cytochrome P450 71B12 OS=Arabidopsis thaliana GN=CYP71B12 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +T++  + W +T L++N   L KA+ E+ + +   + I E DI +L YL+ ++KET             +AS DV+I G+ IPK   + VN WAI R+ + W DP +F
Sbjct:  300 DTSAQVMTWVMTYLISNPRVLKKAQAEVREVIKHKDDIIEEDIERLQYLKMVIKETFRINPLVPLLIPREASKDVKIGGYNIPKKTWIHVNIWAIHRNPNVWKDPEAF 407          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C71BB_ARATH (Cytochrome P450 71B11 OS=Arabidopsis thaliana GN=CYP71B11 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +T++  + W +T L++N   + KA+ E+ + +   + I E DI +L YL+ +VKET             +AS DV+I G+ IPK   + VN WAI R+ + W DP +F
Sbjct:  300 DTSAQVMTWVMTYLISNPRVMKKAQAEVREVIKNKDDIIEEDIERLEYLKMVVKETFRVLPLVPLLIPREASKDVKIGGYDIPKKTWIHVNIWAIHRNPNVWKDPEAF 407          
The following BLAST results are available for this feature:
BLAST of CX297867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
TCMO_MEDSA6.406e-1433.33Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]
TCMO_GLYEC6.406e-1433.33Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza ech... [more]
C83B1_ARATH6.406e-1434.86Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CY... [more]
C71AM_ARATH6.406e-1436.89Cytochrome P450 71A22 OS=Arabidopsis thaliana GN=C... [more]
C71AE_ARATH6.406e-1438.83Cytochrome P450 71A14 OS=Arabidopsis thaliana GN=C... [more]
TCMO_POPTM1.093e-1336.11Trans-cinnamate 4-monooxygenase OS=Populus tremulo... [more]
TCMO_POPKI1.093e-1336.11Trans-cinnamate 4-monooxygenase OS=Populus kitakam... [more]
C71BH_ARATH1.093e-1333.94Cytochrome P450 71B17 OS=Arabidopsis thaliana GN=C... [more]
C71BC_ARATH1.093e-1335.19Cytochrome P450 71B12 OS=Arabidopsis thaliana GN=C... [more]
C71BB_ARATH1.093e-1335.19Cytochrome P450 71B11 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC06006A12SK RindPdig24 Citrus clementina cDNA clone C06006A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297867 ID=CX297867; Name=CX297867; organism=Citrus clementina; type=EST; length=708bp
GAGGTTTTTTCTGAGTCTCAAACGACATTGTTTTATTGAATTTTCGGGGC
TTGACCCGGGGTTTGACCCGGGGTAAATAGCAGCACTCATAAACTTATCT
AATTGCCCAGCGTACTATCAGGAATAATAAGAACTTGGCAGCGCTTGGGG
CTGGCGAGTTCTGGCTAAATTCACTTGCAAATAACTGATGGTATATGTAA
CCAAATACAAATTTGAGTAATCTTGTTTCACTTCATCCTTTTGCGAACTT
CGTAAAAGTAGCTTAGAATCACCACTGCCACAGTAACTGCTACTCCAACT
GCACCTTGAGCTAATATGGTGCAATCATTTGCTGTTGATTTGGAGCCAGA
ACCGGCCTCGTGCCGAATTCGGCACGAGGCTGAAACGACTTCAAGCACAT
TGGAATGGGCAGTAACAGAGCTATTAAACAACTCAGAAGCATTATCAAAA
GCTAGATTGGAGTTGGAACAAAAAGTAGGCAAAGGCAACCTGATTGAGGA
ATCAGACATTACTCAATTACCTTATTTACAAACAATAGTTAAAGAGACCT
TAAGGTTGCACCCGCCAGTGCCGTTGTTACTCCCTCGCAAAGCCTCAGCA
GACGTAGAAATCACAGGCTTCATAATACCAAAGGGTGCGCAAGTTTTGGT
CAATGCATGGGCTATAGGCCGAGATACAAGCACATGGGATGACCCTTACT
CTTTTAAC
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