CX297867

Overview
NameCX297867
Unique NameCX297867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: TCMO_RUTGR (Trans-cinnamate 4-monooxygenase OS=Ruta graveolens GN=CYP73A2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            ETT  ++EW + EL+N+ +   K R E+++ +G  + I E D  +LPYLQ ++KET                 D ++ G+ IP  +++LVNAW +  + + W DP  F
Sbjct:  309 ETTLWSIEWGIAELVNHPDIQKKLRAEIDRVLGPDHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLNDAKLAGYDIPAESKILVNAWWLANNPAHWKDPQVF 416          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C71AO_ARATH (Cytochrome P450 71A24 OS=Arabidopsis thaliana GN=CYP71A24 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 35/104 (33.65%), Postives = 60/104 (57.69%), Query Frame = 1
Query:  376 EAETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTW 687
            + +TT + LEWA+TELL + E L + + E+       + + E D+  + YL+ ++KET             +++ DV++  + IP G  V++NAWAIGR+ +TW
Sbjct:  294 DMDTTYTLLEWAMTELLCHHECLDRLQEEVRMVCKDKSGVSEDDLQDMKYLKAVIKETLRLHPPLPLMVPHESTHDVKLRDYHIPAGTHVMINAWAIGREAATW 397          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 39/108 (36.11%), Postives = 56/108 (51.85%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            ETT  ++EW + EL+N+ E   K R ELE  +G G  I E D  +LPYLQ ++KET                 D ++ G+ IP  +++LVNAW +  +   W  P  F
Sbjct:  309 ETTLWSIEWGIAELVNHPEIQKKLRDELETVLGPGVQITEPDTYKLPYLQAVIKETLRLRMAIPLFLPHMNLHDAKLGGYDIPAESKILVNAWFLANNPEHWKKPEEF 416          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C78A4_PINRA (Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASA-DVEI-TGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +TT+   EW + EL+ + EA  KA+ EL+  VG    +++SDI +LPY+Q +VKE              + S  DV +  G  +P G   +VN W+I  D + W+ PY F
Sbjct:  349 DTTALLTEWTMAELVLHPEAQKKAQAELDAVVGHDRSVKDSDIPKLPYIQAVVKEALRMHPPGPLLSWARLSTEDVNMGDGMCVPAGTTAMVNMWSITHDPNIWESPYEF 458          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C78A1_MAIZE (Cytochrome P450 78A1 OS=Zea mays GN=CYP78A1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 37/110 (33.64%), Postives = 60/110 (54.55%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXK-ASADVEI-TGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +TT+   EW + EL+ +    ++ R E++  VG G    ++D+ ++PYLQ +VKET             + A+ADV +  G ++P G   +VN WAI  D + W DP +F
Sbjct:  348 DTTALLTEWCMAELVRHPAVQARVRAEVDAAVGAGGCPTDADVARMPYLQAVVKETLRAHPPGPLLSWARLATADVPLCNGMVVPAGTTAMVNMWAITHDAAVWADPDAF 457          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C71BV_ARATH (Cytochrome P450 71B34 OS=Arabidopsis thaliana GN=CYP71B34 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 36/108 (33.33%), Postives = 56/108 (51.85%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +T++ T+ WA+ EL  N   + K + E+  ++     I   D  +L YL+ ++KET             +A ++ EI G+ IP   ++ VN WAIGRD  TW DP  F
Sbjct:  304 DTSAITMTWAMAELAKNPRVMKKVQSEIRSQIKNKERISFDDTDKLEYLKMVIKETWRLHPTTPLLIPREAMSEFEINGYTIPVKTRLHVNVWAIGRDPDTWKDPEVF 411          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: CP17A_CHICK (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Gallus gallus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 39/109 (35.78%), Postives = 56/109 (51.38%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFN 708
            ETT++ L+WAV  LL+  E   K + E++QK+G       SD   LPYL+  + E               + AD  I  + IPKGA+V++N W++  D   WD P  FN
Sbjct:  308 ETTTTVLKWAVLYLLHYPEVQKKIQEEMDQKIGLARHPHLSDRPLLPYLEATISEGLRIRPVSPLLIPHVSLADTSIGEYSIPKGARVVINLWSVHHDEKEWDKPEEFN 416          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C71D8_SOYBN (Cytochrome P450 71D8 OS=Glycine max GN=CYP71D8 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            +T++STLEWA++E++ N +   KA+ EL Q      +I E+D+ +L YL++++KET             +      I G+ IP   +V++N WAIGRD   W D   F
Sbjct:  309 DTSASTLEWAMSEMMKNPKVKEKAQAELRQIFKGKEIIRETDLEELSYLKSVIKET-LRLHPPSQLIPRECIISTNIDGYEIPIKTKVMINTWAIGRDPQYWSDADRF 415          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C71AG_ARATH (Cytochrome P450 71A16 OS=Arabidopsis thaliana GN=CYP71A16 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 1
Query:  385 TTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTW 687
            TTS+ +EWA+T L+ N E L K + E+       + +   ++  + YL+ ++KE                S DV++ G+ I  G QV++NAWAI RDT+TW
Sbjct:  303 TTSAVIEWAMTRLMRNPECLKKLQDEIRSVSKMNSYVSGKEVENMNYLKAVIKEVLRLHPPLPLLVPRLLSEDVKLKGYDITAGTQVIINAWAIQRDTATW 403          
BLAST of CX297867 vs. ExPASy Swiss-Prot
Match: C71DA_SOYBN (Cytochrome P450 71D10 OS=Glycine max GN=CYP71D10 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  382 ETTSSTLEWAVTELLNNSEALSKARLELEQKVGKGNLIEESDITQLPYLQTIVKETXXXXXXXXXXXXXKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF 705
            ET+SS +EW ++EL+ N   + +A+ E+ +       ++E+++ QL YL++I+KET              +    +I G+ IP   ++++NAWAIGR+   W +  SF
Sbjct:  315 ETSSSVVEWGMSELIRNPRVMEEAQAEVRRVYDSKGYVDETELHQLIYLKSIIKETMRLHPPVPLLVPRVSRERCQINGYEIPSKTRIIINAWAIGRNPKYWGETESF 422          
The following BLAST results are available for this feature:
BLAST of CX297867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
TCMO_RUTGR1.427e-1333.33Trans-cinnamate 4-monooxygenase OS=Ruta graveolens... [more]
C71AO_ARATH1.864e-1333.65Cytochrome P450 71A24 OS=Arabidopsis thaliana GN=C... [more]
TCMO_CATRO2.434e-1336.11Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
C78A4_PINRA2.434e-1335.45Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 P... [more]
C78A1_MAIZE2.434e-1333.64Cytochrome P450 78A1 OS=Zea mays GN=CYP78A1 PE=2 S... [more]
C71BV_ARATH2.434e-1333.33Cytochrome P450 71B34 OS=Arabidopsis thaliana GN=C... [more]
CP17A_CHICK3.179e-1335.78Steroid 17-alpha-hydroxylase/17,20 lyase OS=Gallus... [more]
C71D8_SOYBN3.179e-1335.19Cytochrome P450 71D8 OS=Glycine max GN=CYP71D8 PE=... [more]
C71AG_ARATH3.179e-1334.65Cytochrome P450 71A16 OS=Arabidopsis thaliana GN=C... [more]
C71DA_SOYBN4.152e-1331.48Cytochrome P450 71D10 OS=Glycine max GN=CYP71D10 P... [more]

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Properties
Property NameValue
Genbank descriptionC06006A12SK RindPdig24 Citrus clementina cDNA clone C06006A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297867 ID=CX297867; Name=CX297867; organism=Citrus clementina; type=EST; length=708bp
GAGGTTTTTTCTGAGTCTCAAACGACATTGTTTTATTGAATTTTCGGGGC
TTGACCCGGGGTTTGACCCGGGGTAAATAGCAGCACTCATAAACTTATCT
AATTGCCCAGCGTACTATCAGGAATAATAAGAACTTGGCAGCGCTTGGGG
CTGGCGAGTTCTGGCTAAATTCACTTGCAAATAACTGATGGTATATGTAA
CCAAATACAAATTTGAGTAATCTTGTTTCACTTCATCCTTTTGCGAACTT
CGTAAAAGTAGCTTAGAATCACCACTGCCACAGTAACTGCTACTCCAACT
GCACCTTGAGCTAATATGGTGCAATCATTTGCTGTTGATTTGGAGCCAGA
ACCGGCCTCGTGCCGAATTCGGCACGAGGCTGAAACGACTTCAAGCACAT
TGGAATGGGCAGTAACAGAGCTATTAAACAACTCAGAAGCATTATCAAAA
GCTAGATTGGAGTTGGAACAAAAAGTAGGCAAAGGCAACCTGATTGAGGA
ATCAGACATTACTCAATTACCTTATTTACAAACAATAGTTAAAGAGACCT
TAAGGTTGCACCCGCCAGTGCCGTTGTTACTCCCTCGCAAAGCCTCAGCA
GACGTAGAAATCACAGGCTTCATAATACCAAAGGGTGCGCAAGTTTTGGT
CAATGCATGGGCTATAGGCCGAGATACAAGCACATGGGATGACCCTTACT
CTTTTAAC
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