CX305140

Overview
NameCX305140
Unique NameCX305140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length316
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX305140 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.657e-18
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = -2 
Query:    1 EQIGWDLTAASAFCATWDANKPLAWRQKYGWTTFCHSGGPIGQAACGRCLRVTNS 165
            + I WDL  AS FCATWDA+KPL+WR KYGWT FC   GP GQ +CG+CL VTN+
Sbjct:    1 QNINWDLRTASVFCATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNT 55
[Close]
BLAST of CX305140 vs. ExPASy Swiss-Prot
Match: CHAL_BRARA (Chitin-binding allergen Bra r 2 (Fragments) OS=Brassica rapa PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.076e-13
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = -2 
Query:   13 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTTFCHSGGPIGQAACGRCLR 186
            TYH Y+P Q  WDL A SA+C+TWDA+KP +WR  YGWT FC   GP       RCLR
Sbjct:   35 TYHYYNPAQNNWDLRAVSAYCSTWDADKPYSWR--YGWTAFCGPAGP-------RCLR 83
The following BLAST results are available for this feature:
BLAST of CX305140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4_PRUPE3.657e-1865.45Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]
CHAL_BRARA2.076e-1356.90Chitin-binding allergen Bra r 2 (Fragments) OS=Bra... [more]

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Properties
Property NameValue
Genbank descriptionC18001F04Rv Drought1 Citrus clementina cDNA clone C18001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305140 ID=CX305140; Name=CX305140; organism=Citrus clementina; type=EST; length=316bp
ACTGTTTGTGACCCTTAAGCACCTGCCACAAGCAGCTTGTCCAATGGGTC
CGCCCGAATGACAGAAAGTAGTCCAGCCATATTTCTGGCGCCAGGCCAAG
GGCTTGTTGGCATCCCATGTTGCGCAGAAAGCGCTCGCTGCCGTCAAGTC
CCATCCAATTTGCTCAGGGTGGTAGAGATGATACGTGGCTCTCACATTAG
AAGCACTTTGGGCAGAAGCAGCTGCCACCAGTAGACAAACTGACAGAATC
ACACAGAGACCGAACCTTCCCATATTTTTCTCTTAATGTTCTAAGCTTAA
CTTATTCGTTGCACCC
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