CX305140

Overview
NameCX305140
Unique NameCX305140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length316
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305140 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.127e-26
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = -2
Query:    1 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTTFCHSGGPIGQAACGRCLRVTNS 186
            TYHLY+P+ I WDL AASAFCATWDA+KPLAWRQKYGWT FC   GP GQ +CGRCLRVTN+
Sbjct:   34 TYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNT 95          
BLAST of CX305140 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.127e-26
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = -2
Query:    1 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTTFCHSGGPIGQAACGRCLRVTNS 186
            TYHLY+P+ I WDL AASAFCATWDA+KPLAWRQKYGWT FC   GP GQ +CGRCLRVTN+
Sbjct:   34 TYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNT 95          
BLAST of CX305140 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.460e-24
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = -2
Query:    1 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTTFCHSGGPIGQAACGRCLRVTNS 186
            TYHLY+P+ I WDL  AS +CATWDA+KPL WR++YGWT FC   GP GQA+CGRCLRVTN+
Sbjct:   32 TYHLYNPQNINWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNT 93          
BLAST of CX305140 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.935e-24
Identity = 41/62 (66.13%), Postives = 53/62 (85.48%), Query Frame = -2
Query:    1 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTTFCHSGGPIGQAACGRCLRVTNS 186
            TYH+Y+P+ +GWDL A SA+C+TWDANKPL+WR+KYGWT FC   GP G+ +CG+CLRVTN+
Sbjct:   86 TYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSCGKCLRVTNT 147          
BLAST of CX305140 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.213e-23
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = -2
Query:    1 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTTFCHSGGPIGQAACGRCLRVTNS 186
            TYH+Y+P+ +GWDL A SA+C+TWDANKP AWR KYGWT FC   GP G+ +CG+CLRVTN+
Sbjct:   85 TYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNT 146          
BLAST of CX305140 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.174e-22
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = -2
Query:    1 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTTFCHSGGPIGQAACGRCLRVTNS 186
            TYH Y+P Q  WDL A SA+C+TWDA+KP AWR KYGWT FC   GP GQA+CG+CLRV N+
Sbjct:   80 TYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQASCGKCLRVKNT 141          
BLAST of CX305140 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.120e-22
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = -2
Query:    4 TYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTTFCHSGGPIGQAACGRCLRVTN 186
            TYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWT FC   GP GQAACG+CLRVTN
Sbjct:    9 TYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTN 71          
BLAST of CX305140 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.706e-21
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = -2
Query:    1 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTTFCHSGGPIGQAACGRCLRVTNS 186
            TYHLY+ +  GWDL AASA+C+TWDANKP +WR KYGWT FC   G  GQ++CG+CL VTN+
Sbjct:   76 TYHLYNSQDHGWDLNAASAYCSTWDANKPYSWRSKYGWTAFCGPVGAHGQSSCGKCLSVTNT 137          
BLAST of CX305140 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.027e-21
Identity = 43/63 (68.25%), Postives = 47/63 (74.60%), Query Frame = -2
Query:    4 TYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTTFCHSGGPIGQAACGRCLRVTN 186
            TYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWT FC   G  GQAACG+CLRVTN
Sbjct:   32 TYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAACGKCLRVTN 94          
BLAST of CX305140 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.907e-20
Identity = 41/63 (65.08%), Postives = 47/63 (74.60%), Query Frame = -2
Query:    4 TYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTTFCHSGGPIGQAACGRCLRVTN 186
            TYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWT FC   G  GQA+CG+CL+VTN
Sbjct:   30 TYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQASCGKCLQVTN 92          
The following BLAST results are available for this feature:
BLAST of CX305140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4B_TOBAC8.127e-2677.42Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PR4A_TOBAC8.127e-2677.42Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PRP2_SOLLC4.460e-2469.35Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
WIN1_SOLTU9.935e-2466.13Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
WIN2_SOLTU2.213e-2366.13Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
HEVL_ARATH4.174e-2266.13Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]
BARW_HORVU7.120e-2269.84Barwin OS=Hordeum vulgare PE=1 SV=1[more]
HEVE_HEVBR2.706e-2164.52Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
WHW2_WHEAT6.027e-2168.25Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WHW1_WHEAT3.907e-2065.08Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC18001F04Rv Drought1 Citrus clementina cDNA clone C18001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305140 ID=CX305140; Name=CX305140; organism=Citrus clementina; type=EST; length=316bp
ACTGTTTGTGACCCTTAAGCACCTGCCACAAGCAGCTTGTCCAATGGGTC
CGCCCGAATGACAGAAAGTAGTCCAGCCATATTTCTGGCGCCAGGCCAAG
GGCTTGTTGGCATCCCATGTTGCGCAGAAAGCGCTCGCTGCCGTCAAGTC
CCATCCAATTTGCTCAGGGTGGTAGAGATGATACGTGGCTCTCACATTAG
AAGCACTTTGGGCAGAAGCAGCTGCCACCAGTAGACAAACTGACAGAATC
ACACAGAGACCGAACCTTCCCATATTTTTCTCTTAATGTTCTAAGCTTAA
CTTATTCGTTGCACCC
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