CX305206

Overview
NameCX305206
Unique NameCX305206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_CHLRE (40S ribosomal protein S3a OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_168484 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.956e-27
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = -3
Query:  198 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKVDRPA 446
            R+KM +I+  +A SCDLK LV KFI E  G++IEK+   IYPLQN FIRKVK+LKAPKFD+ KLMEVHGDYSE VG K++RPA
Sbjct:  165 RKKMMEIITREATSCDLKELVAKFIPESIGKDIEKSCQGIYPLQNTFIRKVKVLKAPKFDITKLMEVHGDYSEEVGAKIERPA 247          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A2_VITVI (40S ribosomal protein S3a-2 OS=Vitis vinifera GN=GSVIVT00031140001 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.273e-25
Identity = 58/66 (87.88%), Postives = 60/66 (90.91%), Query Frame = -3
Query:  249 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 446
            RRKMR+IM  QAASCDLK LV KFI E+ GREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME
Sbjct:  165 RRKMREIMTTQAASCDLKELVRKFIPEMIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 230          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_OSTLU (40S ribosomal protein S3a OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_28528 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.248e-25
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = -3
Query:  180 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPE 446
            R KM +I+  +  +CDLK LV KFI EV G+EIEK+ + IYPLQNV+IRKVKILKAPKFDL KLMEVHGDYS E VG  V RP +E   E
Sbjct:  165 RAKMVEIITRECTTCDLKELVLKFIPEVIGKEIEKSCAGIYPLQNVYIRKVKILKAPKFDLTKLMEVHGDYSGEAVGEAVARPVEEKAEE 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_TORRU (40S ribosomal protein S3a OS=Tortula ruralis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 1.077e-24
Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSS-IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKV 446
            RRKMR+IMV +A +CDLK LV KFI EV G+EI++  S  IYPLQ+ FIRKVKILKAPKFDL KLMEVHGDY+E VG K+
Sbjct:  162 RRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 241          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_LENED (40S ribosomal protein S1 OS=Lentinula edodes GN=RPS1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.077e-24
Identity = 51/86 (59.30%), Postives = 67/86 (77.91%), Query Frame = -3
Query:  189 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKVDRPADEP 446
            R+KM +IM  +A +CDLK LV+KF+ E  GREIEKA+ SIYPLQNV++RK KILKAPKFD+ KLME+HG+ ++  G K+ +   EP
Sbjct:  165 RKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKASRSIYPLQNVYVRKAKILKAPKFDVSKLMELHGESTDETGTKIAKDFKEP 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_COPC7 (40S ribosomal protein S1 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.837e-24
Identity = 52/86 (60.47%), Postives = 67/86 (77.91%), Query Frame = -3
Query:  189 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKVDRPADEP 446
            R+KM +I+  +A SCDLK LV+KF+ E  GREIEKA+ SIYPLQNV+IRK KILKAPKFD+ KL+E+HGD ++  G +V +   EP
Sbjct:  165 RKKMFEIITREATSCDLKELVQKFVPEAIGREIEKASRSIYPLQNVYIRKAKILKAPKFDVSKLLELHGDSTDESGTRVTKDFKEP 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_LACBS (40S ribosomal protein S1 OS=Laccaria bicolor (strain S238N-H82) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 4.094e-24
Identity = 49/86 (56.98%), Postives = 66/86 (76.74%), Query Frame = -3
Query:  189 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKVDRPADEP 446
            R+KM +IM  +A +CDLK LV+KF+ E  GREIEKA  SIYPLQNV++RK KILK+PKFD+ KL+E+HGD ++  G ++ +   EP
Sbjct:  165 RKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKAARSIYPLQNVYVRKAKILKSPKFDMSKLLELHGDSTDETGTRIAKDFKEP 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_POSPM (40S ribosomal protein S1 OS=Postia placenta (strain ATCC 44394 / Madison 698-R) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 9.119e-24
Identity = 51/86 (59.30%), Postives = 65/86 (75.58%), Query Frame = -3
Query:  189 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKVDRPADEP 446
            R+KM +IM  +A+SCDLK LV+KFI E  GREIEKA   IYPLQNVF+ K KILKAPKFD+ KL+E+HG+ ++  G +V +   EP
Sbjct:  165 RQKMFEIMTREASSCDLKELVQKFIPEAIGREIEKAARGIYPLQNVFVHKAKILKAPKFDMSKLLELHGESTDETGTRVVKDFKEP 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_ASPCL (40S ribosomal protein S1 OS=Aspergillus clavatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.902e-21
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKVDRPADEPMPEA 446
            R+KM +IM  +AASC L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  +++ G KV+R   E + E+
Sbjct:  165 RKKMTEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGQKVEREFKEQVLES 255          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_ASPOR (40S ribosomal protein S1 OS=Aspergillus oryzae GN=rps1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.243e-21
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKVDRPADEPMPEA 446
            R+KM +IM  +AASC L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  +++ G KV+R   E + E+
Sbjct:  165 RKKMTEIMQREAASCTLSQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
The following BLAST results are available for this feature:
BLAST of CX305206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
RS3A_CHLRE3.956e-2767.4740S ribosomal protein S3a OS=Chlamydomonas reinhar... [more]
RS3A2_VITVI1.273e-2587.8840S ribosomal protein S3a-2 OS=Vitis vinifera GN=G... [more]
RS3A_OSTLU8.248e-2565.5640S ribosomal protein S3a OS=Ostreococcus lucimari... [more]
RS3A_TORRU1.077e-2471.2540S ribosomal protein S3a OS=Tortula ruralis GN=RP... [more]
RS3A_LENED1.077e-2459.3040S ribosomal protein S1 OS=Lentinula edodes GN=RP... [more]
RS3A_COPC71.837e-2460.4740S ribosomal protein S1 OS=Coprinopsis cinerea (s... [more]
RS3A_LACBS4.094e-2456.9840S ribosomal protein S1 OS=Laccaria bicolor (stra... [more]
RS3A_POSPM9.119e-2459.3040S ribosomal protein S1 OS=Postia placenta (strai... [more]
RS3A_ASPCL1.902e-2158.2440S ribosomal protein S1 OS=Aspergillus clavatus G... [more]
RS3A_ASPOR3.243e-2158.2440S ribosomal protein S1 OS=Aspergillus oryzae GN=... [more]

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Properties
Property NameValue
Genbank descriptionC18002E05Rv Drought1 Citrus clementina cDNA clone C18002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305206 ID=CX305206; Name=CX305206; organism=Citrus clementina; type=EST; length=448bp
CACTTTGTTTTTTTTTTTTTTTTTTCCAGCTAGAATATTTAAAATCTGCA
AACAACTTGAAACATTCATATATGATGAATTCATAACAAACAAAACTGCC
CAGATCAGAATAGTATTGAAAAACAAAACTAGAAAAATTTGTTCATTCAC
GTTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGCATGGGCTCATCAGC
TGGCCTATCCACCTTCACACCAACATTTTCCGAGTAATCACCGTGAACCT
CCATCAATTTTCCAAGATCAAACTTGGGAGCTTTCAGGATCTTCACTTTG
CGAATGAACACATTTTGTAAGGGGTATATGCTTGACGTTGCCTTCTCAAT
CTCTCTTCCAGTCACTTCAGCAATGAACTTTTCGACCAAGCTCTTAAGAT
CACAAGATGCTGCCTGAGCAACCATGATCTGCCTCATCTTGCGGCGAA
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