CX305206

Overview
NameCX305206
Unique NameCX305206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_SUBDO (40S ribosomal protein S3a OS=Suberites domuncula PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.999e-16
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = -3
Query:  219 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVG 446
            R+KM  +M  + +  DLK  V K I +  G++IEK   SIYPL +VF+RKVK+LK PKFD+G+LM++HG+ +   G
Sbjct:  164 RKKMVDVMTREVSQIDLKETVNKLIPDSIGKDIEKKCQSIYPLHDVFVRKVKVLKKPKFDIGRLMDLHGESAGGKG 239          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_THEAN (40S ribosomal protein S3a OS=Theileria annulata GN=TA17795 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.194e-15
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = -3
Query:  219 RKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVG 443
            +KM  +M  +A++  LK LV+K I E  G+EIEKA  SI+PLQNV +RK+K+LK PKFDL KLME H    E  G
Sbjct:  166 KKMVAVMTNEASNSTLKELVKKVIPESIGKEIEKACKSIFPLQNVLVRKIKVLKKPKFDLTKLMESHNYSGEEEG 240          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_PICPG (40S ribosomal protein S1 OS=Pichia pastoris (strain GS115) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.194e-15
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKV 446
            R+KM +IM  + ++  L  L  K I EV GREIEKA   IYPLQNV IRKVK+LK  KFDLG L+ +HG+  +E  G KV
Sbjct:  165 RKKMVEIMQREVSNVTLAQLTSKLIPEVIGREIEKAAEGIYPLQNVHIRKVKVLKQAKFDLGALLALHGESVTEENGKKV 244          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_BIPLU (40S ribosomal protein S3a OS=Biphyllus lunatus PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.194e-15
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-------NVGVKVDRPA--DEPMPEA 446
            R+KM +I+    +  DLK +V K + +   ++IEKA+  IYPL +V+IRKVK+LK P+F+L KL+E+HGD  +         G KVD+P   + P+ EA
Sbjct:  168 RKKMVEIITRDISGSDLKEVVNKLLPDSIAKDIEKASQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDSGKGGSGEPGEAGSKVDKPEGYEPPVQEA 266          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_THEPA (40S ribosomal protein S3a OS=Theileria parva GN=TP03_0697 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.036e-15
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = -3
Query:  219 RKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVG 443
            +KM  +M  +A++  LK LV+K I E  G+EIEKA  SI+PLQNV +RK+K+LK PKFDL KLME H    +  G
Sbjct:  166 KKMVSVMTNEASNSTLKELVKKVIPESIGKEIEKACKSIFPLQNVLVRKIKVLKKPKFDLTKLMESHNYSGDEEG 240          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_APLCA (40S ribosomal protein S3a OS=Aplysia californica GN=RPS3A PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.036e-15
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENV--------GVKVDR 446
            R+KM +I+  + +S D+K +V K I +  G++IEK+   IYPL +V I KVK+LK PKFD+GKLME+HG+ S           G KVDR
Sbjct:  165 RKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDR 253          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_CRYHO (40S ribosomal protein S3a OS=Cryptosporidium hominis GN=Chro.40360 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.659e-15
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVH--GDYSENVGVKV 446
            R+KM +I+ A+A    L+ LV+KFI E  G+EIEKA   I+PLQ+VFIRKVK+L  P FD+ +LME H   D  E  G KV
Sbjct:  165 RKKMVEIITAEAEGTTLRDLVKKFIPESIGKEIEKACRHIFPLQHVFIRKVKVLSKPSFDVSRLMESHVGADGVEEKGTKV 245          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_ARTSF (40S ribosomal protein S3a OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.659e-15
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  201 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--------YSENVGVKVDRP 446
            R+KM +I+  + +S DLK  V K I +   ++IEK+  SIYP+  V+IRKVK+LK PKFD+GKL+++HG+          +  GV + RP
Sbjct:  168 RKKMTEIITKEISSGDLKEAVSKLIPDSIAKDIEKSCHSIYPIHEVYIRKVKVLKKPKFDMGKLLDMHGEGAVTKRVTTEDGTGVVISRP 257          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_TRIIF (40S ribosomal protein S3a OS=Triatoma infestans PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.473e-15
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = -3
Query:  189 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--YSENVGVKVDRP-ADEP 446
            RRKM   + +  ++ DL+ +V K I +   ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD   S+  G KV RP A EP
Sbjct:  168 RRKMVDNITSSISNSDLRVVVNKLIPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGSDEPGAKVSRPEAYEP 256          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_ZYGRC (40S ribosomal protein S1 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.925e-15
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = -3
Query:  192 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKVDRPADE 446
            R+   +I+  +  +  L     K I EV  +E+E AT  I+PLQNV +RKVK+LK PKFDLG LM +HG+ S+  G KV    DE
Sbjct:  165 RKVFSEILTREVQNSTLAQFTSKLIPEVINKEMENATKDIFPLQNVHVRKVKLLKQPKFDLGSLMALHGEGSDETGKKVSGFKDE 249          
The following BLAST results are available for this feature:
BLAST of CX305206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
RS3A_SUBDO6.999e-1648.6840S ribosomal protein S3a OS=Suberites domuncula P... [more]
RS3A_THEAN1.194e-1554.6740S ribosomal protein S3a OS=Theileria annulata GN... [more]
RS3A_PICPG1.194e-1555.0040S ribosomal protein S1 OS=Pichia pastoris (strai... [more]
RS3A_BIPLU1.194e-1542.4240S ribosomal protein S3a OS=Biphyllus lunatus PE=... [more]
RS3A_THEPA2.036e-1553.3340S ribosomal protein S3a OS=Theileria parva GN=TP... [more]
RS3A_APLCA2.036e-1547.1940S ribosomal protein S3a OS=Aplysia californica G... [more]
RS3A_CRYHO2.659e-1553.0940S ribosomal protein S3a OS=Cryptosporidium homin... [more]
RS3A_ARTSF2.659e-1543.3340S ribosomal protein S3a OS=Artemia sanfranciscan... [more]
RS3A_TRIIF3.473e-1548.3140S ribosomal protein S3a OS=Triatoma infestans PE... [more]
RS3A_ZYGRC5.925e-1545.8840S ribosomal protein S1 OS=Zygosaccharomyces roux... [more]

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Properties
Property NameValue
Genbank descriptionC18002E05Rv Drought1 Citrus clementina cDNA clone C18002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305206 ID=CX305206; Name=CX305206; organism=Citrus clementina; type=EST; length=448bp
CACTTTGTTTTTTTTTTTTTTTTTTCCAGCTAGAATATTTAAAATCTGCA
AACAACTTGAAACATTCATATATGATGAATTCATAACAAACAAAACTGCC
CAGATCAGAATAGTATTGAAAAACAAAACTAGAAAAATTTGTTCATTCAC
GTTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGCATGGGCTCATCAGC
TGGCCTATCCACCTTCACACCAACATTTTCCGAGTAATCACCGTGAACCT
CCATCAATTTTCCAAGATCAAACTTGGGAGCTTTCAGGATCTTCACTTTG
CGAATGAACACATTTTGTAAGGGGTATATGCTTGACGTTGCCTTCTCAAT
CTCTCTTCCAGTCACTTCAGCAATGAACTTTTCGACCAAGCTCTTAAGAT
CACAAGATGCTGCCTGAGCAACCATGATCTGCCTCATCTTGCGGCGAA
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