CX305206

Overview
NameCX305206
Unique NameCX305206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_ANOGA (40S ribosomal protein S3a OS=Anopheles gambiae GN=RpS3A PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 5.925e-15
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = -3
Query:  201 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENV---------GVKVDRP 446
            R KM  I+  +  S DLK +VEK + +   ++IEKA   +YPL +V+IRKVK+LK P+FDL  LME+HGD              GV VDRP
Sbjct:  168 RAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGDGGGKAAEVSTGAASGVVVDRP 258          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_TRIAD (40S ribosomal protein S3a OS=Trichoplax adhaerens GN=TRIADDRAFT_36460 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.738e-15
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = -3
Query:  189 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSENVGVKVDRPADEP 446
            R+KM  I+  + ++ DLK +V + I +  G++IEK+  SIYPL +V+IRKVK+LK PK D  KL+E+HG+    S + G  V R   EP
Sbjct:  164 RKKMTDIITREVSAIDLKEVVNRLIPDSIGKDIEKSCQSIYPLHDVYIRKVKVLKKPKLDTAKLLELHGEGVASSGDAGSAVRRDGYEP 252          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_VANPO (40S ribosomal protein S1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.320e-14
Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  192 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADE 446
            R+ + +I+  +     L  L  K I EV  +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E  G KV    DE
Sbjct:  165 RKVISEILTREVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGSLMALHGEGSGEEKGKKVSGFKDE 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_AEDAE (40S ribosomal protein S3a OS=Aedes aegypti GN=AAEL005901 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.320e-14
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = -3
Query:  201 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD----------YSENVGVKVDRP 446
            RRKM  I+     S DLK +V K + +   ++IEK+   IYPL +V+IRKVK+LK P+FDL  L+E+HGD           +   GV +DRP
Sbjct:  168 RRKMTTIITRDVTSSDLKEVVNKLLPDSIAKDIEKSCQGIYPLHDVYIRKVKVLKKPRFDLANLLELHGDGGGKGAEVSTGAAEGGVTIDRP 259          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_CULQU (40S ribosomal protein S3a OS=Culex quinquefasciatus GN=CPIJ008584 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.724e-14
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = -3
Query:  201 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD----------YSENVGVKVDRP 446
            R+ M QI+     S DLK +V K + +   ++IEKA   +YPL +V+IRKVK+LK P+FDL  L+E+HGD           +   GV VDRP
Sbjct:  168 RKNMTQIITNNVTSSDLKEVVNKLLPDSIAKDIEKACQGVYPLHDVYIRKVKVLKKPRFDLANLLELHGDGGGKGAEVSTGAAEGGVVVDRP 259          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_MONBE (40S ribosomal protein S3a OS=Monosiga brevicollis GN=34920 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.251e-14
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKVDR 446
            R KM +IM  +A +CDLK  V K +    G+EI+K   SI+PLQ+V+IRKVK+LK P+FD+ KL+E+HG   E  GV  D+
Sbjct:  164 RAKMVEIMQREA-TCDLKEFVSKLMPGTIGQEIQKKCQSIFPLQDVYIRKVKVLKKPRFDVSKLLELHG---EAGGVTADK 240          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_KLULA (40S ribosomal protein S1 OS=Kluyveromyces lactis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.251e-14
Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  192 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADE 446
            R+ + +I+  +  +  L  L  K I EV  +EIE AT  I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E  G KV    DE
Sbjct:  165 RKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGSLLSLHGEASAEEKGKKVAGFKDE 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_ASHGO (40S ribosomal protein S1 OS=Ashbya gossypii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.251e-14
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKV 446
            R+ + +I+  +  +  L  L  K I EV  +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E  G KV
Sbjct:  165 RKVISEILTREVQNATLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGALMTLHGESSGEEKGKKV 244          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_ANODA (40S ribosomal protein S3a OS=Anopheles darlingi PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.251e-14
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = -3
Query:  201 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENV---------GVKVDRP 446
            R++M  I+  +  + DLK +VEK + +   ++IEKA   +YPL +VFIRKVK+LK P+FDL  L+E+HGD              GV VDRP
Sbjct:  168 RQRMTTIIKREIINSDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVFIRKVKVLKKPRFDLSSLLELHGDGGGKAAEVSTGAASGVVVDRP 258          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_LACTC (40S ribosomal protein S1 OS=Lachancea thermotolerans (strain CBS 6340) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.940e-14
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKV 446
            R+ + +I+  +  +  L  L  K I EV  +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E  G KV
Sbjct:  165 RKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGALMTLHGEASGEEKGKKV 244          
The following BLAST results are available for this feature:
BLAST of CX305206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
RS3A_ANOGA5.925e-1546.1540S ribosomal protein S3a OS=Anopheles gambiae GN=... [more]
RS3A_TRIAD7.738e-1544.9440S ribosomal protein S3a OS=Trichoplax adhaerens ... [more]
RS3A_VANPO1.320e-1450.0040S ribosomal protein S1 OS=Vanderwaltozyma polysp... [more]
RS3A_AEDAE1.320e-1443.4840S ribosomal protein S3a OS=Aedes aegypti GN=AAEL... [more]
RS3A_CULQU1.724e-1443.4840S ribosomal protein S3a OS=Culex quinquefasciatu... [more]
RS3A_MONBE2.251e-1450.6240S ribosomal protein S3a OS=Monosiga brevicollis ... [more]
RS3A_KLULA2.251e-1448.8440S ribosomal protein S1 OS=Kluyveromyces lactis G... [more]
RS3A_ASHGO2.251e-1451.2540S ribosomal protein S1 OS=Ashbya gossypii GN=RPS... [more]
RS3A_ANODA2.251e-1443.9640S ribosomal protein S3a OS=Anopheles darlingi PE... [more]
RS3A_LACTC2.940e-1451.2540S ribosomal protein S1 OS=Lachancea thermotolera... [more]

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Properties
Property NameValue
Genbank descriptionC18002E05Rv Drought1 Citrus clementina cDNA clone C18002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305206 ID=CX305206; Name=CX305206; organism=Citrus clementina; type=EST; length=448bp
CACTTTGTTTTTTTTTTTTTTTTTTCCAGCTAGAATATTTAAAATCTGCA
AACAACTTGAAACATTCATATATGATGAATTCATAACAAACAAAACTGCC
CAGATCAGAATAGTATTGAAAAACAAAACTAGAAAAATTTGTTCATTCAC
GTTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGCATGGGCTCATCAGC
TGGCCTATCCACCTTCACACCAACATTTTCCGAGTAATCACCGTGAACCT
CCATCAATTTTCCAAGATCAAACTTGGGAGCTTTCAGGATCTTCACTTTG
CGAATGAACACATTTTGTAAGGGGTATATGCTTGACGTTGCCTTCTCAAT
CTCTCTTCCAGTCACTTCAGCAATGAACTTTTCGACCAAGCTCTTAAGAT
CACAAGATGCTGCCTGAGCAACCATGATCTGCCTCATCTTGCGGCGAA
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