CX305206

Overview
NameCX305206
Unique NameCX305206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_CANGA (40S ribosomal protein S1 OS=Candida glabrata GN=RPS1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.940e-14
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  192 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADE 446
            R+ +  I+  + ++  L     K I EV  +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E  G KV    DE
Sbjct:  165 RKVISDILTREVSNSTLAQFTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGSLMALHGEGSAEEKGKKVSGFKDE 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_DROWI (40S ribosomal protein S3a OS=Drosophila willistoni GN=RpS3A PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.016e-14
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD----YSENV----GVKVDRPA--DEPMPEA 446
            R +M  I+  + +  DLK LV K   +   ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD     SE V    G  VDRP   + P+ EA
Sbjct:  168 RARMTDIINNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDISKLLELHGDGGGKTSEAVVSAEGAVVDRPEGYEPPVQEA 267          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAST (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae GN=RPS1B PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 5.016e-14
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  192 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADE 446
            R+ + +I+  +  +  L  L  K I EV  +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E  G KV    DE
Sbjct:  165 RKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVSGFKDE 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS7 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain YJM789) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.016e-14
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  192 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADE 446
            R+ + +I+  +  +  L  L  K I EV  +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E  G KV    DE
Sbjct:  165 RKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVSGFKDE 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS6 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain AWRI1631) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.016e-14
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  192 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADE 446
            R+ + +I+  +  +  L  L  K I EV  +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E  G KV    DE
Sbjct:  165 RKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVSGFKDE 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS1 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.016e-14
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  192 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADE 446
            R+ + +I+  +  +  L  L  K I EV  +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E  G KV    DE
Sbjct:  165 RKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVSGFKDE 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_DROSE (40S ribosomal protein S3a OS=Drosophila sechellia GN=RpS3A PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.551e-14
Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--------YSENVGVKVDRPA--DEPMPEA 446
            R +M  I+  + +  DLK LV K   +   ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD           + G  +DRP   + P+ EA
Sbjct:  168 RARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEA 267          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_DROPS (40S ribosomal protein S3a OS=Drosophila pseudoobscura pseudoobscura GN=RpS3A PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.551e-14
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENV--------GVKVDRPA--DEPMPEA 446
            R +M  I+  + +  DLK LV K   +   ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD             G  VDRP   + P+ EA
Sbjct:  168 RARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKTTEAVVSAEGAVVDRPEGYEPPVQEA 267          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_DROPE (40S ribosomal protein S3a OS=Drosophila persimilis GN=RpS3A PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.551e-14
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENV--------GVKVDRPA--DEPMPEA 446
            R +M  I+  + +  DLK LV K   +   ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD             G  VDRP   + P+ EA
Sbjct:  168 RARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKTTEAVVSAEGAVVDRPEGYEPPVQEA 267          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_DROMO (40S ribosomal protein S3a OS=Drosophila mojavensis GN=RpS3A PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.551e-14
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENV--------GVKVDRPA--DEPMPEA 446
            R +M  I+  + +  DLK LV K   +   ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD             G  +DRP   + P+ EA
Sbjct:  168 RARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDISKLLELHGDGGGKTTEAVVSAEGAVIDRPEGYEPPVQEA 267          
The following BLAST results are available for this feature:
BLAST of CX305206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
RS3A_CANGA2.940e-1448.8440S ribosomal protein S1 OS=Candida glabrata GN=RP... [more]
RS3A_DROWI5.016e-1444.0040S ribosomal protein S3a OS=Drosophila willistoni... [more]
RS3A2_YEAST5.016e-1446.5140S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A2_YEAS75.016e-1446.5140S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A2_YEAS65.016e-1446.5140S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A2_YEAS15.016e-1446.5140S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A_DROSE6.551e-1440.0040S ribosomal protein S3a OS=Drosophila sechellia ... [more]
RS3A_DROPS6.551e-1441.0040S ribosomal protein S3a OS=Drosophila pseudoobsc... [more]
RS3A_DROPE6.551e-1441.0040S ribosomal protein S3a OS=Drosophila persimilis... [more]
RS3A_DROMO6.551e-1440.0040S ribosomal protein S3a OS=Drosophila mojavensis... [more]

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Properties
Property NameValue
Genbank descriptionC18002E05Rv Drought1 Citrus clementina cDNA clone C18002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305206 ID=CX305206; Name=CX305206; organism=Citrus clementina; type=EST; length=448bp
CACTTTGTTTTTTTTTTTTTTTTTTCCAGCTAGAATATTTAAAATCTGCA
AACAACTTGAAACATTCATATATGATGAATTCATAACAAACAAAACTGCC
CAGATCAGAATAGTATTGAAAAACAAAACTAGAAAAATTTGTTCATTCAC
GTTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGCATGGGCTCATCAGC
TGGCCTATCCACCTTCACACCAACATTTTCCGAGTAATCACCGTGAACCT
CCATCAATTTTCCAAGATCAAACTTGGGAGCTTTCAGGATCTTCACTTTG
CGAATGAACACATTTTGTAAGGGGTATATGCTTGACGTTGCCTTCTCAAT
CTCTCTTCCAGTCACTTCAGCAATGAACTTTTCGACCAAGCTCTTAAGAT
CACAAGATGCTGCCTGAGCAACCATGATCTGCCTCATCTTGCGGCGAA
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