CX305206

Overview
NameCX305206
Unique NameCX305206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_DROER (40S ribosomal protein S3a OS=Drosophila erecta GN=RpS3A PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.551e-14
Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--------YSENVGVKVDRPA--DEPMPEA 446
            R +M  I+  + +  DLK LV K   +   ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD           + G  +DRP   + P+ EA
Sbjct:  168 RARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEA 267          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_DROVI (40S ribosomal protein S3a OS=Drosophila virilis GN=RpS3A PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.555e-14
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENV--------GVKVDRPA--DEPMPEA 446
            R +M  I+  + +  DLK LV K   +   ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD             G  +DRP   + P+ EA
Sbjct:  168 RARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKTTEAVVSAEGAVIDRPEGYEPPVQEA 267          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAST (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae GN=RPS1A PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 8.555e-14
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  192 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADE 446
            R+ + +I+  +     L  L  K I EV  +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E  G KV    DE
Sbjct:  165 RKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS7 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain YJM789) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.555e-14
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  192 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADE 446
            R+ + +I+  +     L  L  K I EV  +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E  G KV    DE
Sbjct:  165 RKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS6 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain AWRI1631) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.555e-14
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  192 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADE 446
            R+ + +I+  +     L  L  K I EV  +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E  G KV    DE
Sbjct:  165 RKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS2 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain JAY291) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.555e-14
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  192 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADE 446
            R+ + +I+  +     L  L  K I EV  +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E  G KV    DE
Sbjct:  165 RKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS1 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.555e-14
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  192 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADE 446
            R+ + +I+  +     L  L  K I EV  +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E  G KV    DE
Sbjct:  165 RKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_DROME (40S ribosomal protein S3a OS=Drosophila melanogaster GN=RpS3A PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.459e-13
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = -3
Query:  201 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--------YSENVGVKVDRP 446
            R +M  I+  + +  DLK LV K   +   ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD           + G  +DRP
Sbjct:  168 RARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRP 257          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS2 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain JAY291) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.459e-13
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  192 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADE 446
            R+ + +I+  +  +  L  L  K I EV  +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S +  G KV    DE
Sbjct:  165 RKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGKEKGKKVSGFKDE 250          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_DROAN (40S ribosomal protein S3a OS=Drosophila ananassae GN=RpS3A PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.906e-13
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--------YSENVGVKVDRPA--DEPMPEA 446
            R +M  I+  + +  DLK LV K   +   ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD             G  +DRP   + P+ EA
Sbjct:  168 RARMTDIINNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSSDAVVSTEGAVIDRPEGYEPPVQEA 267          
The following BLAST results are available for this feature:
BLAST of CX305206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
RS3A_DROER6.551e-1440.0040S ribosomal protein S3a OS=Drosophila erecta GN=... [more]
RS3A_DROVI8.555e-1440.0040S ribosomal protein S3a OS=Drosophila virilis GN... [more]
RS3A1_YEAST8.555e-1446.5140S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS78.555e-1446.5140S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS68.555e-1446.5140S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS28.555e-1446.5140S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS18.555e-1446.5140S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A_DROME1.459e-1341.1140S ribosomal protein S3a OS=Drosophila melanogast... [more]
RS3A2_YEAS21.459e-1345.3540S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A_DROAN1.906e-1340.0040S ribosomal protein S3a OS=Drosophila ananassae ... [more]

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Properties
Property NameValue
Genbank descriptionC18002E05Rv Drought1 Citrus clementina cDNA clone C18002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305206 ID=CX305206; Name=CX305206; organism=Citrus clementina; type=EST; length=448bp
CACTTTGTTTTTTTTTTTTTTTTTTCCAGCTAGAATATTTAAAATCTGCA
AACAACTTGAAACATTCATATATGATGAATTCATAACAAACAAAACTGCC
CAGATCAGAATAGTATTGAAAAACAAAACTAGAAAAATTTGTTCATTCAC
GTTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGCATGGGCTCATCAGC
TGGCCTATCCACCTTCACACCAACATTTTCCGAGTAATCACCGTGAACCT
CCATCAATTTTCCAAGATCAAACTTGGGAGCTTTCAGGATCTTCACTTTG
CGAATGAACACATTTTGTAAGGGGTATATGCTTGACGTTGCCTTCTCAAT
CTCTCTTCCAGTCACTTCAGCAATGAACTTTTCGACCAAGCTCTTAAGAT
CACAAGATGCTGCCTGAGCAACCATGATCTGCCTCATCTTGCGGCGAA
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