CX305206

Overview
NameCX305206
Unique NameCX305206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJA (40S ribosomal protein S3a OS=Schistosoma japonicum GN=SJCHGC01275 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.246e-13
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = -3
Query:  201 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENV-GVKVDRP 446
            R ++ +I+  + ++CDLK +V K I +   ++  KA S IYPL   FIRKVK+LK PK DL +LME+HG+      G  V RP
Sbjct:  166 RARLVEIIQQEVSTCDLKEVVNKLIPDSIAQDARKAASWIYPLGETFIRKVKVLKRPKADLARLMELHGESKSTAPGETVSRP 248          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_DROGR (40S ribosomal protein S3a OS=Drosophila grimshawi GN=RpS3A PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.545e-13
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENV--------GVKVDRPA--DEPMPEA 446
            R +M  I+  + +  DLK LV K   +   ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+H D             G  +DRP   + P+ EA
Sbjct:  168 RARMTDIITNEVSGVDLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHNDGGGKTTEAVVSAEGAVIDRPEGYEPPVQEA 267          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMA (40S ribosomal protein S3a OS=Bombyx mandarina PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.545e-13
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = -3
Query:  201 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSENVGVKVDRP 446
            R+KM +I+     + +L+ +V K I +   ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+        G K +RP
Sbjct:  168 RKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGGGKREAGDKSERP 252          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_SPOFR (40S ribosomal protein S3a OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.242e-13
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = -3
Query:  201 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE----NVGVKVDRP 446
            R+KM +I+     + +L+ +V K I +   ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+         G K +RP
Sbjct:  168 RKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGSGKRGEAGDKSERP 253          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMO (40S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.242e-13
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = -3
Query:  168 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKVDRPADEPMPEAPTE 446
            R+KM +I+     + +L+ +V K I +   ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+     G   D+       E P +
Sbjct:  168 RKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGGGKGEAGDKSERPEGYEPPVQ 260          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_TAESO (40S ribosomal protein S3a OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.459e-13
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = -3
Query:  201 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKVDRP 446
            R K+ +++  + A CDLKS+V+K I +  G++     SSI+PL    +RKVK+LK PK DLG+++E+H +  ++  G  V RP
Sbjct:  164 RAKIVEVVQREVARCDLKSVVQKLIPDSIGQDAMNEASSIFPLSGALVRKVKVLKKPKLDLGRILELHSEGKADEFGEGVPRP 246          
The following BLAST results are available for this feature:
BLAST of CX305206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
RS3A_SCHJA4.246e-1344.5840S ribosomal protein S3a OS=Schistosoma japonicum... [more]
RS3A_DROGR5.545e-1339.0040S ribosomal protein S3a OS=Drosophila grimshawi ... [more]
RS3A_BOMMA5.545e-1342.3540S ribosomal protein S3a OS=Bombyx mandarina PE=2... [more]
RS3A_SPOFR7.242e-1341.8640S ribosomal protein S3a OS=Spodoptera frugiperda... [more]
RS3A_BOMMO7.242e-1338.7140S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1[more]
RS3A_TAESO9.459e-1340.9640S ribosomal protein S3a OS=Taenia solium PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC18002E05Rv Drought1 Citrus clementina cDNA clone C18002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305206 ID=CX305206; Name=CX305206; organism=Citrus clementina; type=EST; length=448bp
CACTTTGTTTTTTTTTTTTTTTTTTCCAGCTAGAATATTTAAAATCTGCA
AACAACTTGAAACATTCATATATGATGAATTCATAACAAACAAAACTGCC
CAGATCAGAATAGTATTGAAAAACAAAACTAGAAAAATTTGTTCATTCAC
GTTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGCATGGGCTCATCAGC
TGGCCTATCCACCTTCACACCAACATTTTCCGAGTAATCACCGTGAACCT
CCATCAATTTTCCAAGATCAAACTTGGGAGCTTTCAGGATCTTCACTTTG
CGAATGAACACATTTTGTAAGGGGTATATGCTTGACGTTGCCTTCTCAAT
CTCTCTTCCAGTCACTTCAGCAATGAACTTTTCGACCAAGCTCTTAAGAT
CACAAGATGCTGCCTGAGCAACCATGATCTGCCTCATCTTGCGGCGAA
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