CX305206

Overview
NameCX305206
Unique NameCX305206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_EMENI (40S ribosomal protein S1 OS=Emericella nidulans GN=rps1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.586e-20
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKVDRPADEPMPEA 446
            R+KM +IM  +A+SC L  L  K I EV GREIEKAT  IYPLQ+V IRKVK+LK+PKFDLG L+ +HG+  +++ G KV+R   E + E+
Sbjct:  165 RKKMTEIMQREASSCSLAQLTSKLIPEVIGREIEKATQGIYPLQHVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGQKVEREFKEQVLES 255          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A2_SCHPO (40S ribosomal protein S1-B OS=Schizosaccharomyces pombe GN=rps102 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 3.586e-20
Identity = 48/79 (60.76%), Postives = 63/79 (79.75%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKV 446
            R+KM Q++  Q +SC ++ LV+K I EV GREIE+AT SI+PLQNV +RKVKILKAPK D  KL+E+HG+ S++VG KV
Sbjct:  165 RQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 242          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_TALSN (40S ribosomal protein S1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=rps1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.684e-20
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKVDRPADEPMPEA 446
            R+KM +I+  +AASC L  L  K I EV GREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  +++ G KV+R   E + E+
Sbjct:  165 RKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDQGHKVEREFKETVLES 255          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_PENMQ (40S ribosomal protein S1 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=rps1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.684e-20
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKVDRPADEPMPEA 446
            R+KM +I+  +AASC L  L  K I EV GREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  +++ G KV+R   E + E+
Sbjct:  165 RKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDQGHKVEREFKETVLES 255          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_NECH7 (40S ribosomal protein S1 OS=Nectria haematococca (strain 77-13-4 / FGSC 9596 / MPVI) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.117e-20
Identity = 51/90 (56.67%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  180 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SENVGVKVDRPADEPMPE 446
            RRKM  I+  +A+SC L  L  K I EV GREIEK+T  IYPLQNV IRKVK+LK+PKFDLG LM +HG+  +++ G KV+R   E + E
Sbjct:  165 RRKMTDIIQREASSCTLTQLTSKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALMALHGESGTDDQGQKVEREFKERVLE 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A1_SCHPO (40S ribosomal protein S1-A OS=Schizosaccharomyces pombe GN=rps101 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 6.117e-20
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = -3
Query:  210 RKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKV 443
            +KM Q++  QA  C +K LV+K I EV GR IEKAT++IYPLQNVF+RKVKILKAPK D  KL+E+HG+ S++VG KV
Sbjct:  166 QKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE-SQDVGSKV 242          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_SCLS1 (40S ribosomal protein S1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rps1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.989e-20
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  180 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKVDRPADEPMPE 446
            R+KM +I+  +A++C L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++  G KV+R   E + E
Sbjct:  165 RKKMTEIIQREASTCTLTQLTAKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESNTDEQGQKVEREFKEKVLE 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_BOTFB (40S ribosomal protein S1 OS=Botryotinia fuckeliana (strain B05.10) GN=rps1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.989e-20
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  180 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKVDRPADEPMPE 446
            R+KM +I+  +A++C L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++  G KV+R   E + E
Sbjct:  165 RKKMTEIIQREASTCTLTQLTAKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESNTDEQGQKVEREFKEKVLE 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_YARLI (40S ribosomal protein S1 OS=Yarrowia lipolytica GN=RPS1 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.363e-19
Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKVDR 446
            R+KM  I+V +A++  L  L  K I EV GREIEKAT +IYPLQNV+IRKVK+LK PKFDLG L+ +HG  +++ G KV+R
Sbjct:  165 RKKMTDIVVREASNVTLAQLTAKLIPEVIGREIEKATQNIYPLQNVYIRKVKLLKQPKFDLGALLALHGGATDDNGKKVNR 245          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJY (40S ribosomal protein S1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.363e-19
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKV 446
            R+KM Q++  QA  C ++ LV+K I E+ GREIEKAT  I+PLQNVF+RKVKILK+PK D  KL+E HG+ +++VG KV
Sbjct:  165 RQKMFQVIQNQATGCSMRELVQKLIPEIIGREIEKATGGIFPLQNVFVRKVKILKSPKLDAQKLLEQHGE-AQDVGTKV 242          
The following BLAST results are available for this feature:
BLAST of CX305206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
RS3A_EMENI3.586e-2054.9540S ribosomal protein S1 OS=Emericella nidulans GN... [more]
RS3A2_SCHPO3.586e-2060.7640S ribosomal protein S1-B OS=Schizosaccharomyces ... [more]
RS3A_TALSN4.684e-2054.9540S ribosomal protein S1 OS=Talaromyces stipitatus... [more]
RS3A_PENMQ4.684e-2054.9540S ribosomal protein S1 OS=Penicillium marneffei ... [more]
RS3A_NECH76.117e-2056.6740S ribosomal protein S1 OS=Nectria haematococca (... [more]
RS3A1_SCHPO6.117e-2062.8240S ribosomal protein S1-A OS=Schizosaccharomyces ... [more]
RS3A_SCLS17.989e-2055.5640S ribosomal protein S1 OS=Sclerotinia sclerotior... [more]
RS3A_BOTFB7.989e-2055.5640S ribosomal protein S1 OS=Botryotinia fuckeliana... [more]
RS3A_YARLI1.363e-1958.0240S ribosomal protein S1 OS=Yarrowia lipolytica GN... [more]
RS3A_SCHJY1.363e-1958.2340S ribosomal protein S1 OS=Schizosaccharomyces ja... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18002E05Rv Drought1 Citrus clementina cDNA clone C18002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305206 ID=CX305206; Name=CX305206; organism=Citrus clementina; type=EST; length=448bp
CACTTTGTTTTTTTTTTTTTTTTTTCCAGCTAGAATATTTAAAATCTGCA
AACAACTTGAAACATTCATATATGATGAATTCATAACAAACAAAACTGCC
CAGATCAGAATAGTATTGAAAAACAAAACTAGAAAAATTTGTTCATTCAC
GTTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGCATGGGCTCATCAGC
TGGCCTATCCACCTTCACACCAACATTTTCCGAGTAATCACCGTGAACCT
CCATCAATTTTCCAAGATCAAACTTGGGAGCTTTCAGGATCTTCACTTTG
CGAATGAACACATTTTGTAAGGGGTATATGCTTGACGTTGCCTTCTCAAT
CTCTCTTCCAGTCACTTCAGCAATGAACTTTTCGACCAAGCTCTTAAGAT
CACAAGATGCTGCCTGAGCAACCATGATCTGCCTCATCTTGCGGCGAA
back to top