CX305206

Overview
NameCX305206
Unique NameCX305206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_MALGO (40S ribosomal protein S1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.363e-19
Identity = 49/95 (51.58%), Postives = 67/95 (70.53%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS----ENVGVKV-DRPADEPMPEA 446
            R+KM +++  +++SCDL+  V K I EV GREIEK+T  IYPL++VFI KVK+LK PKFD+ KL E+HG  S    E+VG K+      EP+P+A
Sbjct:  164 RKKMFEVIQRESSSCDLREFVAKLIPEVMGREIEKSTQGIYPLKDVFIHKVKVLKRPKFDVNKLYELHGGASVVGAEDVGTKIKSGEFKEPVPQA 258          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_MAGGR (40S ribosomal protein S1 OS=Magnaporthe grisea GN=RPS1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.363e-19
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  180 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKVDRPADEPMPE 446
            RRKM +I+  +A++C L+ L  K I EV GREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+  ++  G KV+R   E + E
Sbjct:  165 RRKMTEIIQREASTCTLQQLTNKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGESTTDEQGQKVEREFKERVLE 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_PENCW (40S ribosomal protein S1 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=rps1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.780e-19
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKVDRPADEPMPEA 446
            R+KM +I+  +A++C L  L  K I EV GREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  +++ G KV+R   E + E+
Sbjct:  165 RKKMTEIIQREASTCTLSQLTHKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESATDDKGQKVEREFKETVLES 255          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_NANOT (40S ribosomal protein S1 OS=Nannizzia otae (strain CBS 113480) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.763e-19
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPEA 446
            R+KM +I+  QA+SC L  L  K + EV GREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S ++ G KV+R   E + E+
Sbjct:  165 RKKMTEIIQRQASSCTLTQLT-KLVPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLALHGEASTDDKGQKVEREFKEKVLES 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_USTMA (40S ribosomal protein S1 OS=Ustilago maydis GN=RPS1 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 8.833e-19
Identity = 50/95 (52.63%), Postives = 66/95 (69.47%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY----SENVGVKV-DRPADEPMPEA 446
            R+KM +I+  +A SCDL+  V K I EV GRE+EKAT  I+PL++V++RKVK+LKAPK DL KL+EVHG      +E+ GVK  +    EP P A
Sbjct:  164 RQKMFEIVQREANSCDLREFVAKLIPEVIGREVEKATQGIFPLKDVYVRKVKVLKAPKDDLNKLLEVHGGAAIAGAEDAGVKARNTEFKEPAPLA 258          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_BABBO (40S ribosomal protein S3a OS=Babesia bovis GN=BBOV_III001480 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.968e-18
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = -3
Query:  219 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVG 446
            RRKM ++M  +A++  ++ +V+K I E  G+EIEKA  S++PLQNV IRK+K+LK PKFDL KLMEVH D SE  G
Sbjct:  165 RRKMIEVMQREASTTSMREVVKKIIPESIGKEIEKACKSVFPLQNVLIRKIKVLKKPKFDLTKLMEVHTDISEETG 240          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_PLAVI (40S ribosomal protein S3a OS=Plasmodium vivax GN=PVX_095080 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.725e-18
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKV 446
            R+KM  IM A+A+   LK LV+KFI E  G+E+EK    IYPLQNV IRKVKILK PK D+ KLME+H D  E+ G  V
Sbjct:  165 RKKMVDIMNAEASKVMLKDLVKKFIPESIGKEVEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDSKEDAGKNV 243          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_PLAF7 (40S ribosomal protein S3a OS=Plasmodium falciparum (isolate 3D7) GN=MAL3P7.35 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.725e-18
Identity = 47/80 (58.75%), Postives = 55/80 (68.75%), Query Frame = -3
Query:  207 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKVD 446
            R+KM  IM A+A+   LK LV+KFI E  G+EIEK    IYPLQNV IRKVKILK PK D+ KLME+H D  E  G  V+
Sbjct:  165 RKKMVDIMTAEASKVLLKDLVKKFIPESIGKEIEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDPKEESGKNVN 244          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_PLAKH (40S ribosomal protein S3a OS=Plasmodium knowlesi (strain H) GN=PKH_081740 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.477e-18
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKV 446
            R+KM  IM A+A+   LK LV+KFI E  G+E+EK    IYPLQNV IRKVKILK PK D+ KLME+H D  E+ G  V
Sbjct:  165 RKKMVDIMNAEASKVLLKDLVKKFIPESIGKEVEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDSKEDAGKNV 243          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_NEMVE (40S ribosomal protein S3a OS=Nematostella vectensis GN=v1g242621 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.477e-18
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = -3
Query:  189 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS--------ENVGVKVDRPADEP 446
            R+KM  I+  + ++ DLK +V K I +  G++IEK+  SIYPL +V IRKVK+LK PKFD+GKLME+HG+ S        +  G K+DR   EP
Sbjct:  164 RKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSHATTTTTDETGTKIDREGFEP 257          
The following BLAST results are available for this feature:
BLAST of CX305206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
RS3A_MALGO1.363e-1951.5840S ribosomal protein S1 OS=Malassezia globosa (st... [more]
RS3A_MAGGR1.363e-1955.5640S ribosomal protein S1 OS=Magnaporthe grisea GN=... [more]
RS3A_PENCW1.780e-1952.7540S ribosomal protein S1 OS=Penicillium chrysogenu... [more]
RS3A_NANOT6.763e-1954.9540S ribosomal protein S1 OS=Nannizzia otae (strain... [more]
RS3A_USTMA8.833e-1952.6340S ribosomal protein S1 OS=Ustilago maydis GN=RPS... [more]
RS3A_BABBO1.968e-1856.5840S ribosomal protein S3a OS=Babesia bovis GN=BBOV... [more]
RS3A_PLAVI5.725e-1858.2340S ribosomal protein S3a OS=Plasmodium vivax GN=P... [more]
RS3A_PLAF75.725e-1858.7540S ribosomal protein S3a OS=Plasmodium falciparum... [more]
RS3A_PLAKH7.477e-1858.2340S ribosomal protein S3a OS=Plasmodium knowlesi (... [more]
RS3A_NEMVE7.477e-1847.8740S ribosomal protein S3a OS=Nematostella vectensi... [more]

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Properties
Property NameValue
Genbank descriptionC18002E05Rv Drought1 Citrus clementina cDNA clone C18002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305206 ID=CX305206; Name=CX305206; organism=Citrus clementina; type=EST; length=448bp
CACTTTGTTTTTTTTTTTTTTTTTTCCAGCTAGAATATTTAAAATCTGCA
AACAACTTGAAACATTCATATATGATGAATTCATAACAAACAAAACTGCC
CAGATCAGAATAGTATTGAAAAACAAAACTAGAAAAATTTGTTCATTCAC
GTTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGCATGGGCTCATCAGC
TGGCCTATCCACCTTCACACCAACATTTTCCGAGTAATCACCGTGAACCT
CCATCAATTTTCCAAGATCAAACTTGGGAGCTTTCAGGATCTTCACTTTG
CGAATGAACACATTTTGTAAGGGGTATATGCTTGACGTTGCCTTCTCAAT
CTCTCTTCCAGTCACTTCAGCAATGAACTTTTCGACCAAGCTCTTAAGAT
CACAAGATGCTGCCTGAGCAACCATGATCTGCCTCATCTTGCGGCGAA
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