CX305206

Overview
NameCX305206
Unique NameCX305206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_MACFA (40S ribosomal protein S3a OS=Macaca fascicularis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 7.477e-18
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------ENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       +  G KV+R
Sbjct:  165 RKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_HUMAN (40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 7.477e-18
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------ENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       +  G KV+R
Sbjct:  165 RKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_FELCA (40S ribosomal protein S3a (Fragment) OS=Felis catus GN=RPS3A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.477e-18
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------ENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       +  G KV+R
Sbjct:  161 RKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 248          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_CRYNE (40S ribosomal protein S1 OS=Cryptococcus neoformans GN=RPS1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.477e-18
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = -3
Query:  180 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-NVGVKVDRPADEPMPE 446
            R KM +IM  +A   DLK LV+KF+ E  GREIEKA   IYPL NV++RK KI+K PK D+ KL+E HG+  + N G KV +  +   PE
Sbjct:  165 RAKMVEIMRREAEGSDLKELVQKFVPESIGREIEKAAKGIYPLHNVYVRKAKIVKTPKIDMSKLLESHGEAMDANTGSKVVKSGEFVEPE 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_CANTT (40S ribosomal protein S1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.477e-18
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKV 446
            R+KM +IM  + ++C L  L  K I EV GREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E  G KV
Sbjct:  165 RKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_CANDC (40S ribosomal protein S1 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.477e-18
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKV 446
            R+KM +IM  + ++C L  L  K I EV GREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E  G KV
Sbjct:  165 RKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_CANAW (40S ribosomal protein S1 OS=Candida albicans (strain WO-1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.477e-18
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKV 446
            R+KM +IM  + ++C L  L  K I EV GREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E  G KV
Sbjct:  165 RKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_CANAL (40S ribosomal protein S1 OS=Candida albicans GN=RPS1 PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 7.477e-18
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKV 446
            R+KM +IM  + ++C L  L  K I EV GREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E  G KV
Sbjct:  165 RKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_CALJA (40S ribosomal protein S3a OS=Callithrix jacchus GN=RPS3A PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.477e-18
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------ENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       +  G KV+R
Sbjct:  165 RKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKIPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_BOVIN (40S ribosomal protein S3a OS=Bos taurus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 7.477e-18
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------ENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       +  G KV+R
Sbjct:  165 RKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          
The following BLAST results are available for this feature:
BLAST of CX305206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
RS3A_MACFA7.477e-1851.1440S ribosomal protein S3a OS=Macaca fascicularis G... [more]
RS3A_HUMAN7.477e-1851.1440S ribosomal protein S3a OS=Homo sapiens GN=RPS3A... [more]
RS3A_FELCA7.477e-1851.1440S ribosomal protein S3a (Fragment) OS=Felis catu... [more]
RS3A_CRYNE7.477e-1851.1140S ribosomal protein S1 OS=Cryptococcus neoforman... [more]
RS3A_CANTT7.477e-1857.5040S ribosomal protein S1 OS=Candida tropicalis (st... [more]
RS3A_CANDC7.477e-1857.5040S ribosomal protein S1 OS=Candida dubliniensis (... [more]
RS3A_CANAW7.477e-1857.5040S ribosomal protein S1 OS=Candida albicans (stra... [more]
RS3A_CANAL7.477e-1857.5040S ribosomal protein S1 OS=Candida albicans GN=RP... [more]
RS3A_CALJA7.477e-1851.1440S ribosomal protein S3a OS=Callithrix jacchus GN... [more]
RS3A_BOVIN7.477e-1851.1440S ribosomal protein S3a OS=Bos taurus GN=RPS3A P... [more]

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Properties
Property NameValue
Genbank descriptionC18002E05Rv Drought1 Citrus clementina cDNA clone C18002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305206 ID=CX305206; Name=CX305206; organism=Citrus clementina; type=EST; length=448bp
CACTTTGTTTTTTTTTTTTTTTTTTCCAGCTAGAATATTTAAAATCTGCA
AACAACTTGAAACATTCATATATGATGAATTCATAACAAACAAAACTGCC
CAGATCAGAATAGTATTGAAAAACAAAACTAGAAAAATTTGTTCATTCAC
GTTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGCATGGGCTCATCAGC
TGGCCTATCCACCTTCACACCAACATTTTCCGAGTAATCACCGTGAACCT
CCATCAATTTTCCAAGATCAAACTTGGGAGCTTTCAGGATCTTCACTTTG
CGAATGAACACATTTTGTAAGGGGTATATGCTTGACGTTGCCTTCTCAAT
CTCTCTTCCAGTCACTTCAGCAATGAACTTTTCGACCAAGCTCTTAAGAT
CACAAGATGCTGCCTGAGCAACCATGATCTGCCTCATCTTGCGGCGAA
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