CX305206

Overview
NameCX305206
Unique NameCX305206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_PICGU (40S ribosomal protein S1 OS=Pichia guilliermondii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.766e-18
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSENVGVKV 446
            R+KM +IM  + ++  L  L +K I EV GREIEK+T +I+PLQNV IRKVK+LK PKFDLG LM +HG+  SE  G KV
Sbjct:  165 RKKMMEIMQREVSNSTLAQLTQKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGNLMSLHGEGASEEKGKKV 244          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_SALSA (40S ribosomal protein S3a OS=Salmo salar GN=rps3a PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.275e-17
Identity = 44/90 (48.89%), Postives = 61/90 (67.78%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           ++ G KVDR
Sbjct:  165 RKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSSAAKPSGDDTGAKVDR 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.666e-17
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+         +  G KV+R
Sbjct:  165 RKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVER 252          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_MOUSE (40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.666e-17
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+         +  G KV+R
Sbjct:  165 RKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVER 252          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_LODEL (40S ribosomal protein S1 OS=Lodderomyces elongisporus GN=RPS1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.666e-17
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGVKV 446
            R+KM +I+  + ++  L  L  K I EV  REIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ SE  G KV
Sbjct:  152 RKKMVEILTREVSNSTLSQLTSKLIPEVISREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEASEEKGKKV 230          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.666e-17
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------ENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G+++EKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       +  G KV+R
Sbjct:  165 RKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A2_DEBHA (40S ribosomal protein S1-B OS=Debaryomyces hansenii GN=RPS1B PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.176e-17
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPEA 446
            R+KM +IM  + ++C L  L  K I EV GREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E  G KV     + + EA
Sbjct:  165 RKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKVSAGFKDVVLEA 255          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A1_DEBHA (40S ribosomal protein S1-A OS=Debaryomyces hansenii GN=RPS1A PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.841e-17
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKV 446
            R+KM +IM  + ++C L  L  K I EV GREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E  G KV
Sbjct:  165 RKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_XENTR (40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.711e-17
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         +  G KV+R
Sbjct:  165 RKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVER 252          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_TAEGU (40S ribosomal protein S3a OS=Taeniopygia guttata GN=RPS3A PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.711e-17
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         +  G KV+R
Sbjct:  165 RKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGTKVER 252          
The following BLAST results are available for this feature:
BLAST of CX305206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
RS3A_PICGU9.766e-1857.5040S ribosomal protein S1 OS=Pichia guilliermondii ... [more]
RS3A_SALSA1.275e-1748.8940S ribosomal protein S3a OS=Salmo salar GN=rps3a ... [more]
RS3A_RAT1.666e-1750.0040S ribosomal protein S3a OS=Rattus norvegicus GN=... [more]
RS3A_MOUSE1.666e-1750.0040S ribosomal protein S3a OS=Mus musculus GN=Rps3a... [more]
RS3A_LODEL1.666e-1754.4340S ribosomal protein S1 OS=Lodderomyces elongispo... [more]
RS3A_GECJA1.666e-1750.0040S ribosomal protein S3a OS=Gecko japonicus GN=RP... [more]
RS3A2_DEBHA2.176e-1751.6540S ribosomal protein S1-B OS=Debaryomyces hanseni... [more]
RS3A1_DEBHA2.841e-1756.2540S ribosomal protein S1-A OS=Debaryomyces hanseni... [more]
RS3A_XENTR3.711e-1748.8640S ribosomal protein S3a OS=Xenopus tropicalis GN... [more]
RS3A_TAEGU3.711e-1748.8640S ribosomal protein S3a OS=Taeniopygia guttata G... [more]

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Properties
Property NameValue
Genbank descriptionC18002E05Rv Drought1 Citrus clementina cDNA clone C18002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305206 ID=CX305206; Name=CX305206; organism=Citrus clementina; type=EST; length=448bp
CACTTTGTTTTTTTTTTTTTTTTTTCCAGCTAGAATATTTAAAATCTGCA
AACAACTTGAAACATTCATATATGATGAATTCATAACAAACAAAACTGCC
CAGATCAGAATAGTATTGAAAAACAAAACTAGAAAAATTTGTTCATTCAC
GTTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGCATGGGCTCATCAGC
TGGCCTATCCACCTTCACACCAACATTTTCCGAGTAATCACCGTGAACCT
CCATCAATTTTCCAAGATCAAACTTGGGAGCTTTCAGGATCTTCACTTTG
CGAATGAACACATTTTGTAAGGGGTATATGCTTGACGTTGCCTTCTCAAT
CTCTCTTCCAGTCACTTCAGCAATGAACTTTTCGACCAAGCTCTTAAGAT
CACAAGATGCTGCCTGAGCAACCATGATCTGCCTCATCTTGCGGCGAA
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