CX305206

Overview
NameCX305206
Unique NameCX305206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_SOLSE (40S ribosomal protein S3a OS=Solea senegalensis GN=rps3a PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.711e-17
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           ++ G KV+R
Sbjct:  165 RKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGTGTATKATGDDTGAKVER 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_ORYLA (40S ribosomal protein S3a OS=Oryzias latipes GN=rps3a PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.711e-17
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           ++ G KV+R
Sbjct:  165 RKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVER 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_TETNG (40S ribosomal protein S3a OS=Tetraodon nigroviridis GN=rps3a PE=3 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 4.847e-17
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           ++ G KV+R
Sbjct:  165 RKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVER 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_EIMTE (40S ribosomal protein S3a OS=Eimeria tenella PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 4.847e-17
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         +  G KV+R
Sbjct:  165 RKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVER 252          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_PARBP (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain Pb03) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 6.330e-17
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPEA 446
            R+KM +I+  +A +  L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S ++ G KV+R   E + E+
Sbjct:  165 RKKMVEIIQREAGTRSLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKETVLES 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_PARBD (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain Pb18) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.330e-17
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPEA 446
            R+KM +I+  +A +  L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S ++ G KV+R   E + E+
Sbjct:  165 RKKMVEIIQREAGTRSLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKETVLES 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_PARBA (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.330e-17
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPEA 446
            R+KM +I+  +A +  L  L  K I EV GREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S ++ G KV+R   E + E+
Sbjct:  165 RKKMVEIIQREAGTRSLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKETVLES 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_OPHHA (40S ribosomal protein S3a OS=Ophiophagus hannah GN=RPS3A PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 6.330e-17
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         +  G KV+R
Sbjct:  165 RKKMVEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVER 252          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_LYSTE (40S ribosomal protein S3a OS=Lysiphlebus testaceipes PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.330e-17
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = -3
Query:  171 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE------NVGVKVDRPADEPMPEAPT 446
            RRKM  I+  +   CDLK +V K + +   ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD           G KVDRP     P   T
Sbjct:  168 RRKMVSIVTDEITKCDLKGVVTKLVPDAIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGGSKTGEVGETGSKVDRPEGYEPPVQET 265          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3AA_XENLA (40S ribosomal protein S3a-A OS=Xenopus laevis GN=rps3a-A PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 6.330e-17
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         +  G KV+R
Sbjct:  165 RKKMFEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVER 252          
The following BLAST results are available for this feature:
BLAST of CX305206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
RS3A_SOLSE3.711e-1747.7840S ribosomal protein S3a OS=Solea senegalensis GN... [more]
RS3A_ORYLA3.711e-1747.7840S ribosomal protein S3a OS=Oryzias latipes GN=rp... [more]
RS3A_TETNG4.847e-1747.7840S ribosomal protein S3a OS=Tetraodon nigroviridi... [more]
RS3A_EIMTE4.847e-1748.8640S ribosomal protein S3a OS=Eimeria tenella PE=2 ... [more]
RS3A_PARBP6.330e-1753.8540S ribosomal protein S1 OS=Paracoccidioides brasi... [more]
RS3A_PARBD6.330e-1753.8540S ribosomal protein S1 OS=Paracoccidioides brasi... [more]
RS3A_PARBA6.330e-1753.8540S ribosomal protein S1 OS=Paracoccidioides brasi... [more]
RS3A_OPHHA6.330e-1748.8640S ribosomal protein S3a OS=Ophiophagus hannah GN... [more]
RS3A_LYSTE6.330e-1744.9040S ribosomal protein S3a OS=Lysiphlebus testaceip... [more]
RS3AA_XENLA6.330e-1748.8640S ribosomal protein S3a-A OS=Xenopus laevis GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC18002E05Rv Drought1 Citrus clementina cDNA clone C18002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305206 ID=CX305206; Name=CX305206; organism=Citrus clementina; type=EST; length=448bp
CACTTTGTTTTTTTTTTTTTTTTTTCCAGCTAGAATATTTAAAATCTGCA
AACAACTTGAAACATTCATATATGATGAATTCATAACAAACAAAACTGCC
CAGATCAGAATAGTATTGAAAAACAAAACTAGAAAAATTTGTTCATTCAC
GTTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGCATGGGCTCATCAGC
TGGCCTATCCACCTTCACACCAACATTTTCCGAGTAATCACCGTGAACCT
CCATCAATTTTCCAAGATCAAACTTGGGAGCTTTCAGGATCTTCACTTTG
CGAATGAACACATTTTGTAAGGGGTATATGCTTGACGTTGCCTTCTCAAT
CTCTCTTCCAGTCACTTCAGCAATGAACTTTTCGACCAAGCTCTTAAGAT
CACAAGATGCTGCCTGAGCAACCATGATCTGCCTCATCTTGCGGCGAA
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