CX305206

Overview
NameCX305206
Unique NameCX305206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_IXOSC (40S ribosomal protein S3a OS=Ixodes scapularis PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.410e-16
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = -3
Query:  171 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-------------NVGVKVDRPADEPMPEAPT 446
            R+KM ++MV + +S +LK +V K I    G++IEK+   IYPL +V IRKVK+LK PKF+LGKL+E+HG+ +                GVKVDRP     P   T
Sbjct:  165 RKKMTEMMVVEVSSSNLKDVVNKLIPGSIGKDIEKSCQHIYPLHDVLIRKVKVLKKPKFELGKLLELHGEGTSKGGAASTAAVAKGEEGVKVDRPEGYEPPVLET 269          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3AB_XENLA (40S ribosomal protein S3a-B OS=Xenopus laevis GN=rps3a-B PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.410e-16
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = -3
Query:  204 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSENVGVKVDR 446
            R+KM +IM  +  + DLK +V K I +  G++IEKA  SIYPL +V+ RKVK+LK PKF+LGKLME+HG+        ++  G KV+R
Sbjct:  165 RKKMMEIMSREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYARKVKMLKKPKFELGKLMELHGEGGGSGKPAADETGAKVER 252          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A1_PICST (40S ribosomal protein S1-A OS=Pichia stipitis GN=RPS1A PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.410e-16
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = -3
Query:  207 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SENVGVKVD 446
            R+KM +IM  + ++  L  L  K I EV GREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+   E  G KV+
Sbjct:  165 RKKMSEIMQREVSAVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKVLKQPKFDLGALLALHGESGGEEKGRKVN 245          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_CAEEL (40S ribosomal protein S3a OS=Caenorhabditis elegans GN=rps-1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.842e-16
Identity = 47/94 (50.00%), Postives = 60/94 (63.83%), Query Frame = -3
Query:  183 RKMRQIMVA----QAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSENVGV---KVDRPADEPMP 443
            RK+R  M+     +   CDLK +V K I +  G++IEK  S +YPLQ V+IRKVKI+K PK DLG+L ++HGD S  VG    KVDRP D   P
Sbjct:  160 RKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGD-SITVGADGEKVDRPDDYEPP 252          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A2_CLAL4 (40S ribosomal protein S1-B OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.842e-16
Identity = 45/80 (56.25%), Postives = 56/80 (70.00%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKV 446
            R+KM +IM  + ++  L  L  K I EV GREIEK+T SI PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E  G KV
Sbjct:  165 RKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A1_CLAL4 (40S ribosomal protein S1-A OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.842e-16
Identity = 45/80 (56.25%), Postives = 56/80 (70.00%), Query Frame = -3
Query:  210 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKV 446
            R+KM +IM  + ++  L  L  K I EV GREIEK+T SI PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E  G KV
Sbjct:  165 RKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_UNCRE (40S ribosomal protein S1 OS=Uncinocarpus reesii (strain UAMH 1704) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.405e-16
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPEA 446
            R+KM +I+  +A++  L  L  K + EV GREIEKAT  IYPLQNV IRKVK+LK PKFD+G L+ +HG+ S ++ G KV+R   E + E+
Sbjct:  165 RKKMVEIIQREASTRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDIGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_AJECG (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.405e-16
Identity = 47/91 (51.65%), Postives = 65/91 (71.43%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPEA 446
            R+K+ +I+  +A++  L  L  K I EV GREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S ++ G KV+R   E + E+
Sbjct:  165 RKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_BRUMA (40S ribosomal protein S3a OS=Brugia malayi GN=Bm1_27225 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.359e-16
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = -3
Query:  183 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSENVGVKVDRPADEPMP 446
            R KM + M  +    DLK +  K + +  G++IEKA S IYPLQ+V IRKVKILK PKF++G+LME+H D   ++   G K++RP D   P
Sbjct:  162 RAKMVEYMQKEVQGSDLKDVCHKLVPDSIGKDIEKACSYIYPLQDVCIRKVKILKKPKFEIGRLMEMHTDVSTFTSAEGEKIERPDDYEPP 252          
BLAST of CX305206 vs. ExPASy Swiss-Prot
Match: RS3A_AJECH (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain H143) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 5.359e-16
Identity = 46/91 (50.55%), Postives = 65/91 (71.43%), Query Frame = -3
Query:  177 RRKMRQIMVAQAASCDLKSLVEKFIAEVTGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-ENVGVKVDRPADEPMPEA 446
            R+K+ +I+  +A++  L  L  K I EV GREI+K+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S ++ G KV+R   E + E+
Sbjct:  165 RKKITEIIQREASTRTLAQLT-KLIPEVIGREIDKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
The following BLAST results are available for this feature:
BLAST of CX305206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
RS3A_IXOSC1.410e-1643.8140S ribosomal protein S3a OS=Ixodes scapularis PE=... [more]
RS3AB_XENLA1.410e-1648.8640S ribosomal protein S3a-B OS=Xenopus laevis GN=r... [more]
RS3A1_PICST1.410e-1654.3240S ribosomal protein S1-A OS=Pichia stipitis GN=R... [more]
RS3A_CAEEL1.842e-1650.0040S ribosomal protein S3a OS=Caenorhabditis elegan... [more]
RS3A2_CLAL41.842e-1656.2540S ribosomal protein S1-B OS=Clavispora lusitania... [more]
RS3A1_CLAL41.842e-1656.2540S ribosomal protein S1-A OS=Clavispora lusitania... [more]
RS3A_UNCRE2.405e-1651.6540S ribosomal protein S1 OS=Uncinocarpus reesii (s... [more]
RS3A_AJECG2.405e-1651.6540S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_BRUMA5.359e-1647.2540S ribosomal protein S3a OS=Brugia malayi GN=Bm1_... [more]
RS3A_AJECH5.359e-1650.5540S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]

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Properties
Property NameValue
Genbank descriptionC18002E05Rv Drought1 Citrus clementina cDNA clone C18002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305206 ID=CX305206; Name=CX305206; organism=Citrus clementina; type=EST; length=448bp
CACTTTGTTTTTTTTTTTTTTTTTTCCAGCTAGAATATTTAAAATCTGCA
AACAACTTGAAACATTCATATATGATGAATTCATAACAAACAAAACTGCC
CAGATCAGAATAGTATTGAAAAACAAAACTAGAAAAATTTGTTCATTCAC
GTTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGCATGGGCTCATCAGC
TGGCCTATCCACCTTCACACCAACATTTTCCGAGTAATCACCGTGAACCT
CCATCAATTTTCCAAGATCAAACTTGGGAGCTTTCAGGATCTTCACTTTG
CGAATGAACACATTTTGTAAGGGGTATATGCTTGACGTTGCCTTCTCAAT
CTCTCTTCCAGTCACTTCAGCAATGAACTTTTCGACCAAGCTCTTAAGAT
CACAAGATGCTGCCTGAGCAACCATGATCTGCCTCATCTTGCGGCGAA
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