CX306159

Overview
NameCX306159
Unique NameCX306159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length320
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: BURPE_ORYSJ (BURP domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=BURP14 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.609e-13
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = 1
Query:    1 AGGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTE--VKKGTKMQTYTIAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAY 306
            A G+   +++ +T+ EC  P  +GE K CATS E ++DF+   LG +V A +TE     G  ++   +A         +SV CH+  +PY V+YCH+  T R Y
Sbjct:  526 APGTAMRQVVSSTVAECARPPSRGETKRCATSAEDVVDFAVEMLGDNVVARATESTAGGGGDVRLGRVAGVPAGGNVTRSVSCHQSLFPYLVYYCHSVPTVRVY 629          
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.020e-13
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 1
Query:   19 AEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAY 306
            A I+ + + ECE P   GE K C  S E MIDF+TS LG+ V   +TE   G+K +       G+      ++V CH+  YPY ++YCH+    R Y
Sbjct:  467 AGIISSAVSECERPASHGETKRCVGSAEDMIDFATSVLGRGVVVRTTENVVGSKKKVVIGKVNGINGGDVTRAVSCHQSLYPYLLYYCHSVPRVRVY 563          
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: JP650_ARATH (Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 7.862e-13
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   25 IMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAY 306
            I+ + + ECE P   GE K C  S E MIDF+TS LG+SV   +TE   G+K +       G+      K+V CH+  YPY ++YCH+    R Y
Sbjct:  471 IITDAVTECERPPSVGETKRCVGSAEDMIDFATSVLGRSVVLRTTENVAGSKEKVVIGKVNGINGGKLTKAVSCHQSLYPYLLYYCHSVPKVRVY 565          
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.987e-12
Identity = 40/104 (38.46%), Postives = 53/104 (50.96%), Query Frame = 1
Query:    1 AGGSVEAEIM-QNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAY 306
            AG   + E M  + + ECE     GE K C  S E MIDF+TS LG++V   +TE  KG+          G+      KSV CH+  YPY ++YCH+    R Y
Sbjct:  466 AGDESQVEKMIGDALSECERAPSAGETKRCVNSAEDMIDFATSVLGRNVVVRTTEDTKGSNGNIMIGSVKGINGGKVTKSVSCHQTLYPYLLYYCHSVPKVRVY 569          
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.655e-12
Identity = 38/103 (36.89%), Postives = 53/103 (51.46%), Query Frame = 1
Query:    1 AGGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAY 306
            A  S  A+++ + + ECE     GE K C  S E MIDF+TS LG++V   +TE   G+K         G+      KSV CH+  YP  ++YCH+    R Y
Sbjct:  469 ANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVY 571          
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.655e-12
Identity = 38/103 (36.89%), Postives = 53/103 (51.46%), Query Frame = 1
Query:    1 AGGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAY 306
            A  S  A+++ + + ECE     GE K C  S E MIDF+TS LG++V   +TE   G+K         G+      KSV CH+  YP  ++YCH+    R Y
Sbjct:  466 ANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVY 568          
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: BURPA_ORYSJ (BURP domain-containing protein 10 OS=Oryza sativa subsp. japonica GN=BURP10 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.135e-11
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   13 VEAEIMQNTIKECEDPG-IKGEQKYCATSLESMIDFSTSKLG-KSVQAISTEVKKGTKM--QTYTIAAGVKQMAADK--SVVCHKQNYPYAVFYCHATQTTRAYIVPL 318
            V A+ +Q+ +  CE    IKGE++ CATS+ES+++F+ S LG + ++A S +V     M    Y + A V+ +A  +  +V CH   +P+AVFYCHA   TR Y V L
Sbjct:  166 VMADGIQSALDTCEHHRPIKGEERACATSIESVVEFAMSVLGTRDLRAFSPDVPPEGIMPGNMYKVVA-VRTVAGLRGDTVTCHTMRFPFAVFYCHAINPTRVYAVVL 272          
BLAST of CX306159 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.634e-11
Identity = 34/92 (36.96%), Postives = 47/92 (51.09%), Query Frame = 1
Query:   34 NTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQ-TYTIAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAY 306
            +T+ ECE    +GE K CATS E ++DF+   LG  +   ST    G+  Q       GV      +SV CH+  +PY V+YCH+    R Y
Sbjct:  475 STVAECERAPSRGETKRCATSAEDIVDFAVEMLGNDIVVRSTASTAGSGGQIRLGNVTGVDGGKVTRSVSCHQSLFPYLVYYCHSVPKVRVY 566          
The following BLAST results are available for this feature:
BLAST of CX306159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
BURPE_ORYSJ4.609e-1335.58BURP domain-containing protein 14 OS=Oryza sativa ... [more]
Y639_ARATH6.020e-1338.14Probable polygalacturonase non-catalytic subunit A... [more]
JP650_ARATH7.862e-1340.00Probable polygalacturonase non-catalytic subunit J... [more]
GP1_SOLLC2.987e-1238.46Polygalacturonase-1 non-catalytic subunit beta OS=... [more]
GP3_SOLLC6.655e-1236.89Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
GP2_SOLLC6.655e-1236.89Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
BURPA_ORYSJ1.135e-1139.81BURP domain-containing protein 10 OS=Oryza sativa ... [more]
BURPC_ORYSJ5.634e-1136.96BURP domain-containing protein 12 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC18014G01Rv Drought1 Citrus clementina cDNA clone C18014G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306159 ID=CX306159; Name=CX306159; organism=Citrus clementina; type=EST; length=320bp
GCGGGTGGATCAGTTGAAGCTGAAATAATGCAGAACACAATCAAAGAGTG
TGAAGACCCTGGCATTAAAGGAGAGCAGAAATATTGTGCAACTTCATTGG
AGTCAATGATTGACTTCAGCACTTCTAAGCTTGGAAAGAGTGTTCAGGCA
ATTTCTACGGAGGTAAAAAAAGGAACCAAGATGCAGACATATACAATCGC
AGCTGGAGTGAAGCAGATGGCAGCCGACAAATCAGTAGTGTGCCATAAGC
AGAACTATCCATATGCTGTATTCTACTGCCATGCAACACAAACCACAAGG
GCTTACATAGTTCCCTTGGA
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