CX308694

Overview
NameCX308694
Unique NameCX308694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14416 contig Ccv1_Contig14416:582..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: AB32G_ARATH (ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDGT-SMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W +PVAW LYGL+  Q GD E  V++ DG   + VKQ ++D   YK  FL V A++ +A+   F  VFA+AIK+ NFQRR
Sbjct: 1341 WANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDGTS-MTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W SPVAW +YG+   QVGD    +++   T  + V +F+K+   Y   FL VV   H+ W+ +F FVFAY IK +N+Q+R
Sbjct: 1382 WASPVAWTIYGIFASQVGDRTDELELTGETEKIQVNEFLKEYLGYDHDFLLVVVFAHVGWVLLFFFVFAYGIKFLNYQKR 1461          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDGTSMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            WL PVAW LYGL+  Q GDI   +     ++M+VKQF+++ Y Y+  FL VVA +++ +  +F  +FA  IKS NFQ+R
Sbjct: 1348 WLCPVAWTLYGLIASQFGDITEPMA---DSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.659e-13
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDGTSMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W  P+AW LYGLV  Q GD++  +      + TV+QF++ N+ +K  FL VVA V +A+  VF F FA  IK+ NFQRR
Sbjct: 1361 WGCPIAWTLYGLVASQFGDLQDPLT---DQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 29/80 (36.25%), Postives = 52/80 (65.00%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPD-GTSMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W+ PVAW +YGL+  Q GD+E  +++P      T+K +++++Y Y   F+  +A V + +   F F+FA+ I+++NFQ+R
Sbjct: 1337 WICPVAWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: PDR6_ORYSJ (Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.355e-12
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDG-TSMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W +PV+W LYGL+T Q GD++  + + DG T+ T   F++D++ ++  FL VVA +   +  +F  VFA AIK +NFQRR
Sbjct: 1371 WANPVSWTLYGLLTSQFGDLDQPLLLADGITTTTAVDFLRDHFGFRHDFLGVVAGMVAGFCVLFAVVFALAIKYLNFQRR 1450          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.355e-12
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDGTSMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W+ PVAW LYGL+  Q GDI T    P    + V  FV++ +D+K S+L  VAVV +A+  +F F+F +AI  +NFQ+R
Sbjct: 1394 WICPVAWTLYGLIVSQYGDIVT----PMDDGIPVNVFVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.339e-11
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDGTSMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W  PVAW LYGLV  Q GDIET ++  DGT   VK FV++ + +K S+L  VA V  A+  +F  +F +AI   NFQ+R
Sbjct: 1383 WACPVAWTLYGLVVSQFGDIETPME--DGT--PVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.339e-11
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDIETLVQIPDGTSMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W  PVAW LYGLV  Q GDIET ++  DGT   VK FV++ + +K S+L  VA V  A+  +F  +F +AI   NFQ+R
Sbjct: 1383 WACPVAWTLYGLVVSQFGDIETPME--DGT--PVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457          
BLAST of CX308694 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.714e-11
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = -3
Query:  182 WLSPVAWNLYGLVTCQVGDI-ETLVQIPDGTSMTVKQFVKDNYDYKTSFLPVVAVVHLAWIGVFLFVFAYAIKSINFQRR 418
            W  PVAW LYGLV  Q G+  +T+  + +    TVK F++    ++  FLPVV V+ + +  +F  +FA++IK++NFQRR
Sbjct: 1366 WACPVAWTLYGLVVSQFGEYTDTMSDVDE----TVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441          
The following BLAST results are available for this feature:
BLAST of CX308694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
AB32G_ARATH1.226e-1348.75ABC transporter G family member 32 OS=Arabidopsis ... [more]
PDR2_NICPL3.567e-1342.50Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
AB40G_ARATH3.567e-1345.57ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR1_NICPL4.659e-1346.84Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
AB29G_ARATH1.038e-1236.25ABC transporter G family member 29 OS=Arabidopsis ... [more]
PDR6_ORYSJ1.355e-1243.75Pleiotropic drug resistance protein 6 OS=Oryza sat... [more]
PDR1_ORYSJ1.355e-1245.57Probable pleiotropic drug resistance protein 1 OS=... [more]
PDR3_ORYSJ3.339e-1148.10Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI3.339e-1148.10Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
TUR2_SPIPO9.714e-1141.25Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]

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Properties
Property NameValue
Genbank descriptionC21002G08Rv AbsLeaSub1 Citrus clementina cDNA clone C21002G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308694 ID=CX308694; Name=CX308694; organism=Citrus clementina; type=EST; length=420bp
TTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAATTAAACTGCTTTATTCA
TTTAATTTCCATAAAAGAATACATTGGATTCCATATCACAATTTCTACTT
AAAAGTCCAAGTAACAAGCAAAATTGAAAGATTACAATTCTAAGAATAGG
TAGCATTCTAAAGATTTGAGCTACAGGTTTATCTCCTTTGGAAGTTGATG
GATTTGATGGCATAGGCAAACACAAATAAGAAGACGCCAATCCAGGCAAG
ATGCACAACAGCGACCACAGGAAGGAAACTAGTCTTGTAATCGTAATTAT
CTTTGACAAATTGCTTCACTGTCATTGAAGTGCCATCAGGGATCTGCACC
AGTGTCTCTATGTCACCAACTTGACAAGTCACAAGGCCATACAGATTCCA
AGCCACCGGAGAAAGCCAGT
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