CX308875
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX308875 vs. ExPASy Swiss-Prot
Match: CSN1_ARATH (COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1 PE=1 SV=2) HSP 1 Score: 329.717 bits (844), Expect = 8.896e-90 Identity = 163/190 (85.79%), Postives = 179/190 (94.21%), Query Frame = 1 Query: 7 VIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRVLINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRVMLLRANLLKHEYNVRAARKL 576 VIA QD+ATYGGLCALASFDR+ELK KVIDN+NFRNFLELVP+VR LINDFYSSRYASCL+YL +LK+NLLLDIHLHDHV+TLYDQIR KALIQYT PFVSVDL MA+AFKTSV+G+EKELEALITDNQIQARIDSHNKILYARHADQRNATFQ+VLQ G+EFD+DVR MLLRANLLKHEY+ R+ARKL Sbjct: 252 VIAPQDIATYGGLCALASFDRSELKQKVIDNINFRNFLELVPDVRELINDFYSSRYASCLEYLASLKSNLLLDIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQMGNEFDRDVRAMLLRANLLKHEYHARSARKL 441
BLAST of CX308875 vs. ExPASy Swiss-Prot
Match: CSN1_DICDI (COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum GN=csn1 PE=1 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 5.264e-58 Identity = 109/189 (57.67%), Postives = 144/189 (76.19%), Query Frame = 1 Query: 7 VIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRVLINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRVMLLRANLLKHEYNVRAARK 573 +I+ QD+A YGGLCALA+FDR ELK KVID+ F+N+LELVPE+R LINDFY+++Y SCL YL +K LLLDIHL+ HVE LY +IR+KAL+QY P+ SVD+++MA+AF T+V +EKE+ LI +N+IQARIDSHNK LYAR ADQR TF++ +Q GS+F +LLR +L + + + RK Sbjct: 240 IISPQDIAYYGGLCALATFDRNELKKKVIDDPMFKNYLELVPELRELINDFYNTKYGSCLKYLDKMKPILLLDIHLYKHVEILYQRIRSKALVQYFSPYQSVDMNIMASAFNTTVTLLEKEISKLIMENEIQARIDSHNKRLYARKADQRTTTFEKTVQVGSDFQNSSNSLLLRLEMLNNNISTVSNRK 428
BLAST of CX308875 vs. ExPASy Swiss-Prot
Match: CSN1_DROME (COP9 signalosome complex subunit 1b OS=Drosophila melanogaster GN=CSN1b PE=2 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 2.142e-51 Identity = 99/186 (53.23%), Postives = 138/186 (74.19%), Query Frame = 1 Query: 7 VIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRVLINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRVMLLRANLLKHEYNVRA 564 +I+ +VA YGGLCALA+FDR ELK VI + +F+ FLEL P++R +I FY S+YASCL L ++ NLL+D+++ HV TLY +IRN+ALIQY P++S D+H MA AF +SV +E E+ LI D QIQARIDSHNKIL+A+ ADQRN+TF+R L G ++ + R+++LRA +LK +V++ Sbjct: 312 MISTSNVAVYGGLCALATFDRQELKRLVIASTSFKLFLELEPQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVTTLYTKIRNRALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKILFAKEADQRNSTFERALIMGKQYQRHTRMLVLRAAMLKSHIHVKS 497
BLAST of CX308875 vs. ExPASy Swiss-Prot
Match: CSN1_MOUSE (COP9 signalosome complex subunit 1 OS=Mus musculus GN=Gps1 PE=1 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.798e-51 Identity = 101/186 (54.30%), Postives = 136/186 (73.12%), Query Frame = 1 Query: 7 VIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRVLINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRVMLLRANLLKHEYNVRA 564 +++ +VA YGGLCALA+FDR EL+ VI + +F+ FLEL P+VR +I FY S+YASCL L +K NLLLD++L HV TLY QIRN+ALIQY P+VS D+H MA AF T+VA +E EL LI + I ARIDSH+KILYAR DQR+ TF++ L G EF + + M+LRA +L+++ +V++ Sbjct: 263 LLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMILRAAVLRNQIHVKS 448
BLAST of CX308875 vs. ExPASy Swiss-Prot
Match: CSN1_XENLA (COP9 signalosome complex subunit 1 OS=Xenopus laevis GN=csn1 PE=2 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 3.654e-51 Identity = 100/186 (53.76%), Postives = 137/186 (73.66%), Query Frame = 1 Query: 7 VIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRVLINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRVMLLRANLLKHEYNVRA 564 +++ +VA YGGLCALA+FDR EL+ VI + +F+ FLEL P+VR +I FY S+YASCL L +K NLLLD++L HV TLY QIRN+ALIQY P+VS D++ MA AF T+V+ +E EL LI + I ARIDSH+KILYAR DQR+ TF++ LQ G EF + + M+LRA +L+++ +V++ Sbjct: 279 LLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEIKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMYKMATAFNTTVSALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLQMGREFQRRAKAMILRAAVLRNQIHVKS 464
BLAST of CX308875 vs. ExPASy Swiss-Prot
Match: CSN1_HUMAN (COP9 signalosome complex subunit 1 OS=Homo sapiens GN=GPS1 PE=1 SV=4) HSP 1 Score: 201.06 bits (510), Expect = 4.772e-51 Identity = 100/186 (53.76%), Postives = 136/186 (73.12%), Query Frame = 1 Query: 7 VIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRVLINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRVMLLRANLLKHEYNVRA 564 +++ +VA YGGLCALA+FDR EL+ VI + +F+ FLEL P+VR +I FY S+YASCL L +K NLLLD++L HV TLY QIRN+ALIQY P+VS D+H MA AF T+VA +E EL LI + I AR+DSH+KILYAR DQR+ TF++ L G EF + + M+LRA +L+++ +V++ Sbjct: 283 LLSPSNVAIYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAALEDELTQLILEGLISARVDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMMLRAAVLRNQIHVKS 468
BLAST of CX308875 vs. ExPASy Swiss-Prot
Match: CSN1_RAT (COP9 signalosome complex subunit 1 OS=Rattus norvegicus GN=Gps1 PE=1 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 6.233e-51 Identity = 100/186 (53.76%), Postives = 136/186 (73.12%), Query Frame = 1 Query: 7 VIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRVLINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRVMLLRANLLKHEYNVRA 564 +++ +VA YGGLCALA+FDR EL+ VI + +F+ FLEL P+VR +I FY S+YASCL L +K NLLLD++L HV TLY QIRN+ALIQY P+VS D+H MA AF T+VA +E EL +I + I ARIDSH+KILYAR DQR+ TF++ L G EF + + M+LRA +L+++ +V++ Sbjct: 263 LLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQVILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMILRAAVLRNQIHVKS 448
BLAST of CX308875 vs. ExPASy Swiss-Prot
Match: CSN1_EMENI (COP9 signalosome complex subunit 1 OS=Emericella nidulans GN=csnA PE=1 SV=2) HSP 1 Score: 142.124 bits (357), Expect = 2.631e-33 Identity = 79/196 (40.31%), Postives = 115/196 (58.67%), Query Frame = 1 Query: 7 VIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRVLINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAF-----------KTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRVMLLRANLLKHEYNVR 561 V+ + DVA YGGLCALAS DR EL+ +V+DN +FRNFLEL P +R I+ F +S++ CL+ L +A+ LLDIHL HV+ LY++IR K++ QY PF V L MA F S + +EL +LI D + ARID +L + D+R + VL + + ++ + LLR+N+++ VR Sbjct: 271 VLTSNDVAVYGGLCALASMDRNELQRRVLDNSSFRNFLELEPHIRRAISFFCNSKFRPCLEILEAYRADYLLDIHLQRHVQVLYNRIRTKSIQQYLIPFNRVSLESMAKIFVLGNPTSQSSQSDSKSAFVQELISLIQDGTLDARIDLEKHVLVSTQGDKRIEVQEAVLDSLDNYVREAHLRLLRSNIIRAGLEVR 466
BLAST of CX308875 vs. ExPASy Swiss-Prot
Match: CSN1_NEUCR (COP9 signalosome complex subunit 1 OS=Neurospora crassa GN=csn-1 PE=1 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.134e-29 Identity = 70/189 (37.04%), Postives = 105/189 (55.56%), Query Frame = 1 Query: 7 VIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRVLINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRVMLLRANLLKHEYNVRAARK 573 + + DVA YGGL ALA+ DR EL++ ++DN +FR FL+ P +R I F + RYA+C++ L + + + LLDI+L HV LY IR K+++QY PF V L M AF IE EL +I D ++ ARID+ NK + LQT +++ + R N++ + V+ +RK Sbjct: 231 IASPNDVAIYGGLLALATMDRHELQANLLDNDSFREFLQREPHIRRAITQFVNGRYAACIEILESYRPDYLLDIYLQKHVPKLYADIRTKSIVQYLKPFSCVRLDTMQKAFNGPGPSIEDELFTMIKDGKLNARIDAINK--------------SKALQTLENYEKQALDRIRRMNIMAADLEVKGSRK 405
BLAST of CX308875 vs. ExPASy Swiss-Prot
Match: CSN1_CAEEL (COP9 signalosome complex subunit 1 OS=Caenorhabditis elegans GN=csn-1 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20 Identity = 54/176 (30.68%), Postives = 92/176 (52.27%), Query Frame = 1 Query: 10 IAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRVLINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRVMLLRANL 537 + + D+ YG L A+A+ RA+LK +V N FR LE P++ L+ + SSR+ C + + ++K LLLD + +V+ L+++IR K ++QY P+ ++ + MA A S A ++ L LI + +ID + I+ NA +RV T Q + +L + L Sbjct: 353 VTSSDLGIYGMLSAMATMSRADLKLQVSGNGTFRKLLESEPQLIELLGSYTSSRFGRCFEIMRSVKPRLLLDPFISRNVDELFEKIRQKCVLQYLQPYSTIKMATMAEAVGMSSAELQLSLLELIEQKHVSLKIDQNEGIVRILDERDENAILKRVNVTCDRATQKAKSLLWKTTL 528 The following BLAST results are available for this feature:
BLAST of CX308875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308875 ID=CX308875; Name=CX308875; organism=Citrus clementina; type=EST; length=692bpback to top |